Correction of bug in List_LQuery (bad size of remaining list to be inspected)

(Mirroring bug fix from Patrick in GetDP)

Do a default List_Create in List_CreateFromFile instead of returning NULL.
(This fixes the problems in Plugins that assume that the element lists
are all ready to be added into.)

add sanity check in List_Pop

And more airplane work!

- merged STL patch from Nicolas Tardieu. This patch permits to
  create an real elementary surface for each STL face. Until
  we have some code to directly remesh the STL data (which would
  be much nicer and cheaper), this is very useful. We can finally
  use STL representations to create meshable volume models.
  Thanks Nicolas !

- new option to color the mesh by physical entities (if an element
  belongs to multiple physicals, we use the first one)

- additional cleanup of the mesh drawing code

- big cleanup of the geometry creation section in the parser:

  * removed horrible Geo/DataBase.cpp
  * fixed all List-related memory leaks (a lot!)
  * added tests to check if we don't try to recreate existing
    entities (this should prevent many weird bugs due to incorrect
    input files)

- fixed LineLoop/EdgeLoop memory leaks

- many small fixes all over the place

Update copyright notice

remove malloc.h include

Fix whitespace in copyright headers

Add missing copyright headers

white space

Add Contributor(s) where due.

Oops, forgot to remove debug printf

Cleanup Tree_Replace/Tree_Insert + better error detection in Read_Mesh.

Indented all source files using utils/gmshindent

Fix some dependencies + enable GSL (so that more people test it).

This is a pretty big commit.

- The Numerical Recipes routines have been moved to their own
subdirectory: NR/

- These routines are now completely optional. Configure will
determine if they have to be compiled in (if it's a non-free version
of Gmsh) or if we should use the GSL routines instead.

- The GSL routines are there. Well, sort of. The SVD stuff works
great, but the minimization routines still need more work. The whole
infrastructure is there, though: we can already compile a fully GPL
compliant version of Gmsh by removing the NR subdirectory (or by
specifying --enable-gsl to configure).

- I also simplified the options passed to the compiler (OPTIM and
FLAGS).

That's all for today folks...

New makefile system based on autoconf. Only tested on Linux right now.

Replace fwrite with safe_fwrite

Updated copyright

compilation directives (cf. __APPLE__), were to rename the type
ColorTable to GmshColorTable and the function Palette to Palette1,
in order to avoid conflicts with Apple's QuickDraw.
Note that HFS is case-insensitive, which requires to have a fltk lib
name otherwise than libfltk.a (in the Mac version, the GL part is separate
anyway, so I've been using libfltk_base.a and libfltk_gl.a).