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contrib/arc/OctreeLSImage/OctreeLSImage.cpp

+//
+// Description: 
+//
+//
+// Author:  <Boris Sedji>,  12/2009
+//
+// Copyright: See COPYING file that comes with this distribution
+//
+//
+
+
+#ifndef _GMODEL_H_
+#include "GModel.h"
+#define _GMODEL_H_
+#endif
+
+#include "OctreeLSImage.h"
+
+
+
+OctreeLSImage::OctreeLSImage(itk::Image< float, 3 >::Pointer image){
+  
+  itk::Image< float, 3 >::RegionType region;
+	// Define a region to get size of the image
+  region = image->GetLargestPossibleRegion ();
+
+	
+	// Size will be a power of two larger than the image size
+	
+	_size[0] = 1;
+	_size[1] = 1;
+	_size[2] = 1;
+  while (_size[0]<region.GetSize(0)){
+  	_size[0] = _size[0]*2;
+	}
+	while (_size[1]<region.GetSize(1)){
+  	_size[1] = _size[1]*2;
+	}
+	while (_size[2]<region.GetSize(2)){
+  	_size[2] = _size[2]*2;
+	}
+
+  BoxData *data = new BoxData;
+
+	// The window of the image root
+  data->boundingbox[0]=0;
+  data->boundingbox[1]=_size[0];
+  data->boundingbox[2]=0;
+  data->boundingbox[3]=_size[1];
+  data->boundingbox[4]=0;
+  data->boundingbox[5]=_size[2];
+
+	// initialisation of the octree
+  _root = new Box(data,NULL,this);
+  _root->FillLevelSetValue(image,data);
+  _image = image;
+	_LeafNumber = 0;
+
+}
+
+
+void OctreeLSImage::Mesh(int maxsize,int minsize){
+
+  // taillemax   //nombre de pixels max dans une direction
+	
+	if (this->_root->HaveChildren()){
+		return;
+	}
+  if(_root->BoxSize()>maxsize || !_root->IsHomogeneous()){
+  _root->Mesh( maxsize, minsize);
+  };
+
+}
+
+
+Box::Box(BoxData* data, Box* parent,OctreeLSImage* octree){
+
+	_data = data;
+  _parent = parent;
+  _children[0] = NULL;
+  _octree = octree;
+
+}
+
+bool Box::HaveChildren(){
+
+	if (this->_children[0]==NULL) return false;
+	else return true;
+
+}
+
+
+void Box::FillLevelSetValue(itk::Image< float, 3 >::Pointer image, BoxData *data){
+
+  float pixelValue;
+  itk::Image< float, 3 >::IndexType pixelIndex;
+  itk::Image< float, 3 >::RegionType region;
+  region = image->GetLargestPossibleRegion ();
+
+	// fill with pixel value, and if out of region size, fill with value at largest region size
+	for (int i=0;i<2;i++){
+  	for (int j=0;j<2;j++){
+    	for (int k=0;k<2;k++){
+				
+				if (data->boundingbox[i] < region.GetSize(0)) pixelIndex[0] = data->boundingbox[i];
+        else pixelIndex[0] = region.GetSize(0)-1;   // x position
+
+  			if (data->boundingbox[2+j] < region.GetSize(1)) pixelIndex[1] = data->boundingbox[2+j];
+        else pixelIndex[1] = region.GetSize(1)-1;   // y position
+
+  			if (data->boundingbox[4+k] < region.GetSize(2)) pixelIndex[2] = data->boundingbox[4+k];   
+        else pixelIndex[2] = region.GetSize(2)-1; // z position
+
+				pixelValue = image->GetPixel( pixelIndex );
+        data->LevelSetValue[i][j][k] = pixelValue;
+
+  		}
+  	}
+  }
+
+}
+
+int Box::BoxSize(){
+	
+	int SizeX;
+  int SizeY;
+  int SizeZ;
+  int size;
+
+	SizeX = this->_data->boundingbox[1] - this->_data->boundingbox[0];
+	SizeY = this->_data->boundingbox[3] - this->_data->boundingbox[2];
+	SizeZ = this->_data->boundingbox[5] - this->_data->boundingbox[4];
+
+  if (SizeX<SizeY) size = SizeX;
+	else size = SizeY;
+
+  if (SizeZ<size) size = SizeZ;
+
+  return size;
+
+}
+
+bool Box::IsHomogeneous(){
+
+  float OneValue =  this->_data->LevelSetValue[0][0][0];
+
+	for (int i=0;i<2;i++){
+  	for (int j=0;j<2;j++){
+    	for (int k=0;k<2;k++){
+        OneValue = OneValue*this->_data->LevelSetValue[i][j][k];
+       	if (OneValue<0) {
+        	return false; // if sign change => not homogeneous
+        };
+        OneValue =  this->_data->LevelSetValue[i][j][k];
+  		}
+  	}
+  }
+  return true;
+
+}
+
+
+// Recursive dividing function - eight nodes
+
+void Box::Mesh(int & maxsize, int & minsize){
+
+	if(((this->BoxSize()<=maxsize) & (this->IsHomogeneous())) | (this->BoxSize()<=minsize)){  // (max size & homogenous) ou (min size) => dont divide
+  	return; // dont divide
+  }
+
+	// else we divide...
+  this->Divide();
+
+  for (int n = 0;n<8;n++){
+   	_children[n]->Mesh(maxsize,minsize);
+  }
+
+}
+
+void Box::PrintLevelSetValue(){
+
+	for (int i=0;i<2;i++){
+  	for (int j=0;j<2;j++){
+    	for (int k=0;k<2;k++){
+				std::cout<<"\n "<< this->_data->LevelSetValue[i][j][k];
+  		}
+  	}
+  }
+
+}
+
+
+
+GModel *OctreeLSImage::CreateGModel(){
+  
+	this->FillMeshInfo();
+  
+  std::map<int, MVertex*> vertexMap;
+  std::vector<MVertex*> vertexVector;
+
+  std::vector<int> numElement;
+	std::vector<std::vector<int> > vertexIndices;
+	std::vector<int> elementType	;
+	std::vector<int> physical;
+	std::vector<int> elementary;
+	std::vector<int> partition;
+
+	int numVertices;
+  numVertices = _ListNodes.size();
+  int minVertex = numVertices+1;
+  int maxVertex = -1;
+  std::vector<std::vector<int> >::iterator it;
+	it = _ListNodes.begin();
+	int i = 1;
+	while(it!=_ListNodes.end()){
+    int num;        
+    float xyz[3];
+    xyz[0] = ((*it)[0])*1;
+    xyz[1] = ((*it)[1])*1.2;
+		xyz[2] = ((*it)[2])*1.5;
+		num = i;
+		MVertex* newVertex = new MVertex(xyz[0], xyz[1], xyz[2], 0, num);
+		vertexMap[num] = newVertex;
+		it++;
+		i++;
+ 	}
+	minVertex = 1;
+  maxVertex = numVertices;
+	i = 1;
+	it = _ListElements.begin();
+	while(it!=_ListElements.end()) {
+		int num, type, phys = 0, ele = 0, part = 0, numVertices;
+    num = i;
+    type = 5;
+    ele = 26;
+    phys = 0;
+    part = 0;
+    numVertices = MElement::getInfoMSH(type);
+    std::vector <int> indices;
+    for(int j = 0; j < numVertices; j++){
+      indices.push_back((*it)[j]);
+		}
+    numElement.push_back(i);
+    vertexIndices.push_back(indices);
+    elementType.push_back(type);
+    physical.push_back(phys);
+    elementary.push_back(ele);
+    partition.push_back(part);		
+    indices.clear();
+		it++;
+    i++;
+  }
+ 
+	GModel *gmod = GModel::createGModel(vertexMap,numElement,vertexIndices,elementType,physical,elementary,partition);
+	
+	return gmod;
+       
+}
+
+PView *OctreeLSImage::CreateLSPView(GModel* m){
+
+	std::map<int, std::vector<double> > data;
+	std::vector<float>::iterator itf;
+	itf = _ListLSValue.begin();
+  int i = 1;
+  
+  while (itf!=_ListLSValue.end()){
+  	std::vector<double> d;
+    d.push_back((*itf)) ;
+		data[i] = d;
+		d.clear();
+ 		itf++;
+  	i++;
+	}
+	std::string postTypeName = "LevelSet Value" ;
+	PView *pv = new PView (postTypeName, "NodeData", m, data, 0.0);
+
+	return pv; 
+
+}
+
+void OctreeLSImage::FillMeshInfo(){
+
+  if (!_ListNodes.empty()){
+		return;
+	}
+
+	_root->FillMeshInfo(_ListNodes,_ListElements,_ListLSValue);
+
+}
+
+
+
+// fonction par balayage de région
+
+
+void Box::FillMeshInfo(std::vector< std::vector<int> > &ListNodes, std::vector< std::vector<int> > &ListElements, std::vector<float> &ListLSValue){
+
+	int pas = 1;
+	
+  int* size = _octree->GetSize();
+
+	int xpas = size[0]/size[2]*pas;  // à modifier si sizeZ n'est pas le plus petit
+  int ypas = size[1]/size[2]*pas;
+  int zpas = size[2]/size[2]*pas;
+
+	std::cout<<"\nxyzpas :"<< xpas << " " << ypas << " " << zpas;
+	
+	std::vector<std::vector<int> >::iterator it;
+
+  it = ListNodes.begin();
+  int iti=0;	
+
+	for(int z = 0;z<=size[2];z+=zpas)
+	for(int y = 0;y<=size[1];y+=ypas)
+	for(int x = 0;x<=size[0]; x+=xpas)
+	{    
+			std::vector<Box*> Leafs;
+      Leafs.clear();
+			GetLeafsWith(Leafs, x,  y,  z);
+			std::map<int,std::vector< int > > ElementsNodes;			
+			std::vector<int> NodesIn;
+
+			bool added = false;
+			for(unsigned int l=0;l<Leafs.size();l++){           
+				if (!added){
+					std::vector<int> XYZ;
+          XYZ.push_back(x);
+          XYZ.push_back(y);
+ 					XYZ.push_back(z);
+					for (int i = 0 ; i<2;i++ )
+       			for (int j = 0 ; j<2;j++ )
+       				for (int k = 0 ; k<2;k++ ){
+								if (x == Leafs[l]->GetData()->boundingbox[i] & y == Leafs[l]->GetData()->boundingbox[j+2] & z == Leafs[l]->GetData()->boundingbox[4+k] ){
+									ListLSValue.push_back(Leafs[l]->GetData()->LevelSetValue[i][j][k]);
+									ListNodes.push_back(XYZ);
+									added = true;
+									iti++;
+								}
+							}
+				}else break;			
+			}
+			if (added){
+				for(unsigned int l=0;l<Leafs.size();l++){           					
+					for (int i = 0 ; i<2;i++ )
+       			for (int k = 0 ; k<2;k++ )
+       				for (int j = 0 ; j<2;j++ ){
+                int pos ;
+								pos = i*4+k*2+j*1;
+								if (x == Leafs[l]->GetData()->boundingbox[i] & y == Leafs[l]->GetData()->boundingbox[j+2] & z == Leafs[l]->GetData()->boundingbox[k+4]){
+									Leafs[l]->SetElementNode(pos,iti);
+								}
+							}		
+				}
+ 			}
+		}
+	std::cout<<"\nNumber Nodes : "<< ListNodes.size();
+	_octree->GetRoot()->FillElementsNode(ListElements);
+        
+}
+
+void Box::FillElementsNode(std::vector< std::vector<int> > &ListElements){
+
+	// if it s a leaf then fill list node if node dont exist in list
+	if (!this->HaveChildren()) {
+    std::vector<int> ElementNodes;
+		for (int i = 0 ; i < 8 ; i++) ElementNodes.push_back(_ElementNodes[i]);
+		ListElements.push_back(ElementNodes);
+		std::cout<<"\n Nodes :";
+    for (int i = 0 ; i < 8 ; i++)
+    std::cout<<" " << ElementNodes[i]; 
+		return;
+	}
+
+  for (int n = 0 ; n < 8 ; n++){
+ 	 this->_children[n]->FillElementsNode(ListElements);	
+  }
+
+}
+
+
+
+
+/*
+void Box::FillMeshInfo(std::vector< std::vector<int> > &ListNodes, std::vector< std::vector<int> > &ListElements, std::vector<float> &ListLSValue){
+
+	// if it s a leaf then fill list node if node dont exist in list
+	if (!this->HaveChildren()) {
+		std::vector<int> NodesIn;
+		NodesIn.clear();
+		int temp;
+    for (int i = 0 ; i<2;i++ ){
+      for (int k = 0 ; k<2;k++ )
+      	for (int j = 0 ; j<2;j++ ){
+          std::vector<int> XYZ;
+          float LSValue;
+          XYZ.push_back(this->GetData()->boundingbox[i]);
+          XYZ.push_back(this->GetData()->boundingbox[2+j]);
+ 					XYZ.push_back(this->GetData()->boundingbox[4+k]);
+					LSValue = this->GetData()->LevelSetValue[i][j][k];
+					std::vector<std::vector<int> >::iterator it;
+   	 			it = ListNodes.begin();
+          bool add = true;
+					int l;
+					l = 1;
+    			while (it!=ListNodes.end()){ // attention segmentation & pas opti
+						if (((*it)[0] == XYZ[0]) & ((*it)[1] == XYZ[1]) & ((*it)[2] == XYZ[2])){
+							add = false;
+							NodesIn.push_back(l);
+ 							break;
+						}
+          	it++;
+            l++;
+    			}
+					if (add) {
+						ListNodes.push_back(XYZ);
+						ListLSValue.push_back(LSValue);
+						NodesIn.push_back(l);
+					}
+					XYZ.clear();
+    		}
+  		}
+		temp = NodesIn[3];
+    NodesIn[3] = NodesIn[2];
+		NodesIn[2] = temp;
+		temp = NodesIn[7];
+    NodesIn[7] = NodesIn[6];
+		NodesIn[6] = temp;
+		ListElements.push_back(NodesIn);
+		return;
+	}
+
+  for (int n = 0 ; n < 8 ; n++){
+ 	 this->_children[n]->FillMeshInfo(ListNodes,ListElements,ListLSValue);	
+  }
+
+}*/
+
+/*
+std::vector< std::vector <int> > *OctreeLSImage::GetListElements(){
+
+  if (!_ListElements.empty()){
+		return &_ListElements;
+	}
+
+	_root->GetLeafElements(_ListElements);
+
+  return &_ListElements;
+
+}*/
+
+
+/*
+void Box::GetLeafElements(std::vector< std::vector<int> > &ListElements){
+
+// 	if (!this->HaveChildren()) {
+//     std::vector<std::vector<int> >::iterator it;
+//     std::vector<std::vector<int> > *ListNodes;
+//    	ListNodes = this->_octree->GetListNodes(); 
+// 		it = ListNodes->begin();
+// 		std::vector<int> NodesIn;
+//     int l = 1;
+//     while (it!=ListNodes->end())	{
+//     	for (int i = 0 ; i<2;i++ ){
+//       	for (int j = 0 ; j<2;j++ ){
+//       		for (int k = 0 ; k<2;k++ ){
+// 						if ((_data->boundingbox[i] == (*it)[0]) & (_data->boundingbox[2+j] == (*it)[1]) & (_data->boundingbox[4+k] == (*it)[2]))
+// 							NodesIn.push_back(l);
+//     			}
+//   			}
+// 			}
+//       it++;
+//       l++;
+// 		}
+// 		ListElements.push_back(NodesIn);
+// 		return;
+// 	}
+// 
+//   for (int n = 0 ; n < 8 ; n++){
+//  	 this->_children[n]->GetLeafElements(ListElements);	
+//   }
+
+}
+*/
+
+
+
+
+void OctreeLSImage::SetLeafNumber(){
+    _LeafNumber = 0;
+		_root->CountLeafNumber(_LeafNumber);  
+}
+
+void Box::CountLeafNumber(int &LeafNumber){
+
+	if (this->GetChild(0)==NULL) {
+  	LeafNumber = LeafNumber + 1;
+    return;
+	}
+
+  for (int n = 0 ; n < 8 ; n++){
+ 	 this->_children[n]->CountLeafNumber(LeafNumber);	
+  }
+
+}
+
+// Divide function
+
+void Box::Divide(){
+
+// box divide in 8 boxes whit limite xl = (xmin + xmax)/2 ; yl = (ymin + ymax)/2 ; zl = (zmin + zmax)/2
+
+		int n;
+	
+		// Box 1 :  < xl ; < yl  ; < zl  
+
+		n = 0;   
+		BoxData* data1 = new BoxData;    
+
+  	data1->boundingbox[0]=this->_data->boundingbox[0];
+  	data1->boundingbox[1]=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2;
+  	data1->boundingbox[2]=this->_data->boundingbox[2];
+  	data1->boundingbox[3]=(this->_data->boundingbox[3]+this->_data->boundingbox[2])/2;
+  	data1->boundingbox[4]=this->_data->boundingbox[4];
+  	data1->boundingbox[5]=(this->_data->boundingbox[5]+this->_data->boundingbox[4])/2;
+
+  	this->_children[n] = new Box(data1,this,this->_octree);
+  	this->_children[n]->FillLevelSetValue(_children[n]->_octree->GetImage(),_children[n]->GetData());
+
+	 	// Box 2 :  > xl ; < yl  ; < zl
+ 		
+		n = 1;   
+		BoxData* data2 = new BoxData;  
+
+  	data2->boundingbox[0]=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2;
+  	data2->boundingbox[1]=this->_data->boundingbox[1];
+  	data2->boundingbox[2]=this->_data->boundingbox[2];
+  	data2->boundingbox[3]=(this->_data->boundingbox[3]+this->_data->boundingbox[2])/2;
+  	data2->boundingbox[4]=this->_data->boundingbox[4];
+  	data2->boundingbox[5]=(this->_data->boundingbox[5]+this->_data->boundingbox[4])/2;
+
+  	this->_children[n] = new Box(data2,this,this->_octree);
+  	this->_children[n]->FillLevelSetValue(_children[n]->_octree->GetImage(),_children[n]->GetData());
+
+		// Box 3 :  < xl ; > yl  ; < zl
+ 		
+		n = 2;
+		BoxData* data3 = new BoxData;    
+ 
+  	data3->boundingbox[0]=this->_data->boundingbox[0];
+  	data3->boundingbox[1]=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2;
+  	data3->boundingbox[2]=(this->_data->boundingbox[3]+this->_data->boundingbox[2])/2;
+  	data3->boundingbox[3]=this->_data->boundingbox[3];
+  	data3->boundingbox[4]=this->_data->boundingbox[4];
+  	data3->boundingbox[5]=(this->_data->boundingbox[5]+this->_data->boundingbox[4])/2;
+
+  	this->_children[n] = new Box(data3,this,this->_octree);
+  	this->_children[n]->FillLevelSetValue(_children[n]->_octree->GetImage(),_children[n]->GetData());
+
+		// Box 4 :  > xl ; > yl  ; < zl
+ 		
+		n = 3;   
+		BoxData* data4 = new BoxData; 
+ 
+  	data4->boundingbox[0]=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2;
+  	data4->boundingbox[1]=this->_data->boundingbox[1];
+  	data4->boundingbox[2]=(this->_data->boundingbox[3]+this->_data->boundingbox[2])/2;
+  	data4->boundingbox[3]=this->_data->boundingbox[3];
+  	data4->boundingbox[4]=this->_data->boundingbox[4];
+  	data4->boundingbox[5]=(this->_data->boundingbox[5]+this->_data->boundingbox[4])/2;
+
+  	this->_children[n] = new Box(data4,this,this->_octree);
+  	this->_children[n]->FillLevelSetValue(_children[n]->_octree->GetImage(),_children[n]->GetData());
+
+  	// Box 5 :  < xl ; < yl  ; > zl
+ 		
+		n = 4;
+		BoxData* data5 = new BoxData;    
+ 
+  	data5->boundingbox[0]=this->_data->boundingbox[0];
+  	data5->boundingbox[1]=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2;
+  	data5->boundingbox[2]=this->_data->boundingbox[2];
+  	data5->boundingbox[3]=(this->_data->boundingbox[3]+this->_data->boundingbox[2])/2;
+  	data5->boundingbox[4]=(this->_data->boundingbox[5]+this->_data->boundingbox[4])/2;
+  	data5->boundingbox[5]=this->_data->boundingbox[5];
+
+  	this->_children[n] = new Box(data5,this,this->_octree);
+  	this->_children[n]->FillLevelSetValue(_children[n]->_octree->GetImage(),_children[n]->GetData());
+
+		// Box 6 :  > xl ; < yl  ; > zl
+ 		
+		n = 5;
+		BoxData* data6 = new BoxData;    
+ 
+  	data6->boundingbox[0]=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2;
+  	data6->boundingbox[1]=this->_data->boundingbox[1];
+  	data6->boundingbox[2]=this->_data->boundingbox[2];
+  	data6->boundingbox[3]=(this->_data->boundingbox[3]+this->_data->boundingbox[2])/2;
+  	data6->boundingbox[4]=(this->_data->boundingbox[5]+this->_data->boundingbox[4])/2;
+  	data6->boundingbox[5]=this->_data->boundingbox[5];
+
+  	this->_children[n] = new Box(data6,this,this->_octree);
+  	this->_children[n]->FillLevelSetValue(_children[n]->_octree->GetImage(),_children[n]->GetData());
+	
+		// Box 7 :  < xl ; > yl  ; > zl
+ 		
+		n = 6;
+		BoxData* data7 = new BoxData;    
+ 
+  	data7->boundingbox[0]=this->_data->boundingbox[0];
+  	data7->boundingbox[1]=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2;
+  	data7->boundingbox[2]=(this->_data->boundingbox[3]+this->_data->boundingbox[2])/2;
+  	data7->boundingbox[3]=this->_data->boundingbox[3];
+  	data7->boundingbox[4]=(this->_data->boundingbox[5]+this->_data->boundingbox[4])/2;
+  	data7->boundingbox[5]=this->_data->boundingbox[5];
+
+  	this->_children[n] = new Box(data7,this,this->_octree);
+  	this->_children[n]->FillLevelSetValue(_children[n]->_octree->GetImage(),_children[n]->GetData());
+
+		// Box 8 :  > xl ; > yl  ; > zl
+ 		
+		n = 7;   
+		BoxData* data8 = new BoxData; 
+
+  	data8->boundingbox[0]=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2;
+  	data8->boundingbox[1]=this->_data->boundingbox[1];
+  	data8->boundingbox[2]=(this->_data->boundingbox[3]+this->_data->boundingbox[2])/2;
+  	data8->boundingbox[3]=this->_data->boundingbox[3];
+  	data8->boundingbox[4]=(this->_data->boundingbox[5]+this->_data->boundingbox[4])/2;
+  	data8->boundingbox[5]=this->_data->boundingbox[5];
+
+  	this->_children[n] = new Box(data8,this,this->_octree);
+  	this->_children[n]->FillLevelSetValue(_children[n]->_octree->GetImage(),_children[n]->GetData());
+}
+
+bool OctreeLSImage::Smooth(){
+
+	return _root->Smooth();
+
+}
+
+
+bool Box::Smooth(){
+
+	
+	if (!this->HaveChildren()) {
+    bool smoothed = true;
+    BoxData*data = this->GetData();
+ 		std::vector<Box*> Leafs;
+		for (int i = 0 ; i<2;i++ ){
+      for (int j = 0 ; j<2;j++ ){
+      	for (int k = 0 ; k<2;k++ ){
+					Leafs.clear();
+					_octree->GetRoot()->GetLeafsWith(Leafs,data->boundingbox[i],data->boundingbox[2+j],data->boundingbox[4+k]);
+					if (Leafs.size()!=8){
+ 						int min = Leafs[0]->BoxSize();
+						for(unsigned int l=0;l<Leafs.size();l++){           
+							if(min>Leafs[l]->BoxSize()) min = Leafs[l]->BoxSize();
+						}				
+						for(unsigned int l=0;l<Leafs.size();l++){           
+							if(min<=(Leafs[l]->BoxSize())/4){ 
+								Leafs[l]->Divide();
+						  	smoothed = false;
+							}
+						}
+					}
+    		}
+  		}
+	  }
+		return smoothed;
+	}
+
+	bool smoothed = true;
+  for (int n = 0 ; n < 8 ; n++){
+ 	  if(!this->_children[n]->Smooth()) smoothed = false;	
+  }
+	return smoothed;
+}
+
+// Octree research, box specialisation from root
+
+void Box::GetLeafsWith(std::vector<Box*> &Leafs, int x, int y, int z){
+
+		if (!this->HaveChildren()){
+        Box* parent = this;
+        BoxData* data;
+        while(parent->GetParent()!=NULL){
+          data = parent->GetParent()->GetData();
+ 					parent=parent->GetParent();
+        }
+ 			Leafs.push_back(this);											
+ 			return;	
+		}
+ 		
+
+		if ((x<=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2) & (y <= (this->_data->boundingbox[3]+this->_data->boundingbox[2])/2) & (z <= (this->_data->boundingbox[5]+this->_data->boundingbox[4])/2) ){
+  		_children[0]->GetLeafsWith(Leafs,x,y,z);
+    }
+		
+		if ((x>=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2) & (y <= (this->_data->boundingbox[3]+this->_data->boundingbox[2])/2) & (z <= (this->_data->boundingbox[5]+this->_data->boundingbox[4])/2) ){
+  		_children[1]->GetLeafsWith(Leafs,x,y,z);
+    }
+
+		if ((x<=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2) & (y >= (this->_data->boundingbox[3]+this->_data->boundingbox[2])/2) & (z <= (this->_data->boundingbox[5]+this->_data->boundingbox[4])/2) ){
+  		_children[2]->GetLeafsWith(Leafs,x,y,z);
+    }
+		
+		if ((x>=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2) & (y >= (this->_data->boundingbox[3]+this->_data->boundingbox[2])/2) & (z <= (this->_data->boundingbox[5]+this->_data->boundingbox[4])/2) ){
+  		_children[3]->GetLeafsWith(Leafs,x,y,z);
+    }
+
+ 		if ((x<=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2) & (y <= (this->_data->boundingbox[3]+this->_data->boundingbox[2])/2) & (z >= (this->_data->boundingbox[5]+this->_data->boundingbox[4])/2) ){
+  		_children[4]->GetLeafsWith(Leafs,x,y,z);
+    }
+ 		
+		if ((x>=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2) & (y <= (this->_data->boundingbox[3]+this->_data->boundingbox[2])/2) & (z >= (this->_data->boundingbox[5]+this->_data->boundingbox[4])/2) ){
+  		_children[5]->GetLeafsWith(Leafs,x,y,z);
+    }
+
+		if ((x<=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2) & (y >= (this->_data->boundingbox[3]+this->_data->boundingbox[2])/2) & (z >= (this->_data->boundingbox[5]+this->_data->boundingbox[4])/2) ){
+  		_children[6]->GetLeafsWith(Leafs,x,y,z);
+    }
+		
+		if ((x>=(this->_data->boundingbox[1]+this->_data->boundingbox[0])/2) & (y >= (this->_data->boundingbox[3]+this->_data->boundingbox[2])/2) & (z >= (this->_data->boundingbox[5]+this->_data->boundingbox[4])/2) ){
+  		_children[7]->GetLeafsWith(Leafs,x,y,z);
+    }
+ 		
+}

contrib/arc/OctreeLSImage/OctreeLSImage.h

+//
+// Description: 
+//
+//
+// Author:  <Boris Sedji>,  12/2009
+//
+// Copyright: See COPYING file that comes with this distribution
+//
+//
+
+
+
+#ifndef _ITK_H_
+#include "itkImage.h"
+#include "itkImageFileReader.h"
+#include "itkImageFileWriter.h"
+#define _ITK_H_
+#endif
+
+#ifndef _PVIEW_H_
+#include "PView.h"
+#define _PVIEW_H_
+#endif
+
+#ifndef _PVIEWDATA_H_
+#include "PViewData.h"
+#define _PVIEWDATA_H_
+#endif
+
+
+
+
+//data defining a box
+
+class BoxData{
+ 	public:
+		int boundingbox[6]; // x1, x2, y1, y2, z1, z2
+		float LevelSetValue[2][2][2]; // LevelSetValue[x][y][z]
+};
+
+class OctreeLSImage;
+class Box;
+
+// Octree class to decompose a float valued 3d image
+
+class OctreeLSImage
+{
+ 	 
+	private :
+
+		// Octree's root
+		Box* _root;
+  	// Octree's image
+    itk::Image< float, 3 >::Pointer _image;
+		// Window size
+		int _size[3];
+		// Mesh list of nodes
+    std::vector< std::vector <int> > _ListNodes;
+		// Mesh list of elements
+		std::vector< std::vector <int> > _ListElements;
+		// Mesh list of levelsetvalue
+    std::vector< float > _ListLSValue;
+ 		// Number of box leafs
+    int _LeafNumber;
+		// Count octree's leafs
+		void SetLeafNumber();
+		void FillMeshInfo();
+
+	public :
+
+    OctreeLSImage(itk::Image< float, 3 >::Pointer image);
+    //~OctreeLSImage();
+		void Erase();
+    Box* GetRoot(){return _root;}
+		// Refine with related mesh conditions (see implementation)
+    void Mesh(int  maxsize, int  minsize);
+    itk::Image< float, 3 >::Pointer GetImage(){return _image;}
+    int GetLeafNumber(){this->SetLeafNumber();return _LeafNumber;}
+    // Refine if too much generations between adjacent leafs 
+		bool Smooth();
+		//std::vector< std::vector <int> > *GetListElements();
+		// Create GModel
+		GModel* CreateGModel();
+    // Create PView representation of the level set
+		PView* CreateLSPView(GModel* m);
+    int* GetSize(){return _size;}
+
+};
+
+
+class Box{
+      private :
+
+				// children pointers
+      	Box* _children[8];
+        Box* _parent;
+        BoxData* _data;
+        OctreeLSImage* _octree;
+				int _ElementNodes[8]; // utilisé seulement par balayage
+
+			public :
+
+        Box(BoxData* data,Box* parent,OctreeLSImage* octree);
+        BoxData* GetData(){return _data;}
+        // Does it have children
+        bool HaveChildren();
+				// Fill level set value in data with image values        
+        void FillLevelSetValue(itk::Image< float, 3 >::Pointer image, BoxData *data);
+	      // The smallest length of the box
+        int BoxSize();
+				// Is the box crossed by the iso zero levelset
+				bool IsHomogeneous();
+				// Recursive function to refine until condition is reached (see implementation)
+        void Mesh(int & maxsize, int & minsize);
+				// Divide by eight the box leaf
+				void Divide();
+        void PrintLevelSetValue();
+        Box* GetParent(){return _parent;};
+        Box* GetChild(int n){return _children[n];};
+				// Recursive function to count the leafs from the root
+        void CountLeafNumber(int &LeafNumber);
+				// Recursive function to smoothed the octree (see OctreeLSImage::Smooth)
+  			bool Smooth();
+				// Give all the leafs containing this node
+        void GetLeafsWith(std::vector<Box*> &Leafs, int x, int y, int z);
+				// Recursive function to create the list of the mesh nodes, elements and levelset values
+				void FillMeshInfo(std::vector<std::vector<int> > &ListNodes, std::vector< std::vector<int> > &ListElements, std::vector< float > &ListLSValue);
+				// Recursive function to create the list of mesh elements in relation with the list of nodes
+				void SetElementNode(int pos,int iti){_ElementNodes[pos]=iti;}
+				void FillElementsNode(std::vector< std::vector<int> > &ListElements);
+  	};