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// $Id: Field.cpp,v 1.26 2008-03-23 21:42:57 geuzaine Exp $
// Copyright (C) 1997-2008 C. Geuzaine, J.-F. Remacle
//
// This program is free software; you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation; either version 2 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
// USA.
//
// Please report all bugs and problems to <gmsh@geuz.org>.
#include <fstream>
#include <string>
#include <sstream>
#ifdef HAVE_MATH_EVAL
#include "matheval.h"
#endif
#ifdef HAVE_ANN
#include "ANN/ANN.h"
#endif
#include "Context.h"
#include "Field.h"
#include "GeoInterpolation.h"
#include "GModel.h"
#include "Message.h"
#include "OctreePost.h"
#include "PViewDataList.h"
class FieldOptionDouble : public FieldOption {
public:
double &val;
FieldOptionType get_type()
{
return FIELD_OPTION_DOUBLE;
}
FieldOptionDouble(double &_val, bool * _status = NULL)
: FieldOption(_status), val(_val)
{
}
void numerical_value(double v)
{
modified();
val = v;
void get_text_representation(std::string & v_str)
{
std::ostringstream sstream;
sstream.precision(16);
sstream << val;
v_str = sstream.str();
}
int &val;
FieldOptionType get_type()
{
return FIELD_OPTION_INT;
}
FieldOptionInt(int &_val, bool * _status = NULL)
: FieldOption(_status), val(_val)
{
}
void get_text_representation(std::string & v_str)
{
std::ostringstream sstream;
sstream << val;
v_str = sstream.str();
}
class FieldOptionList : public FieldOption {
public:
std::list<int> &val;
FieldOptionType get_type()
{
return FIELD_OPTION_LIST;
}
FieldOptionList(std::list < int >&_val, bool * _status = NULL)
: FieldOption(_status), val(_val)
{
return val;
}
void get_text_representation(std::string & v_str)
{
std::ostringstream sstream;
sstream << "{";
for(std::list < int >::iterator it = val.begin(); it != val.end(); it++) {
if(it != val.begin())
sstream << ", ";
sstream << *it;
}
sstream << "}";
v_str = sstream.str();
}
class FieldOptionString : public FieldOption {
public:
std::string &val;
virtual FieldOptionType get_type()
{
return FIELD_OPTION_STRING;
}
FieldOptionString(std::string &_val, bool *_status = NULL)
: FieldOption(_status), val(_val)
{
}
std::string &string()
{
{
std::ostringstream sstream;
sstream << "\"" << val << "\"";
v_str = sstream.str();
}
class FieldOptionBool : public FieldOption {
public:
bool &val;
FieldOptionType get_type()
{
return FIELD_OPTION_BOOL;
}
FieldOptionBool(bool &_val, bool *_status = NULL)
: FieldOption(_status), val(_val)
{
}
double numerical_value() const
{
return val;
void numerical_value(double v)
{
modified();
val = v;
void get_text_representation(std::string & v_str)
{
std::ostringstream sstream;
sstream << val;
v_str = sstream.str();
}
for(std::map<int, Field*>::iterator it = begin(); it != end(); it++) {
return NULL;
}
return it->second;
}
Field *FieldManager::new_field(int id, const char *type_name)
{
if(find(id) != end()) {
Msg(GERROR, "Field id %i is already defined.", id);
return NULL;
}
if(map_type_name.find(type_name) == map_type_name.end()) {
Msg(GERROR, "Unknown field type \"%s\".", type_name);
return NULL;
}
Field *f = (*map_type_name[type_name]) ();
if(!f)
return NULL;
f->id = id;
(*this)[id] = f;
int FieldManager::new_id()
{
int i = 0;
iterator it = begin();
while(1) {
i++;
while(it != end() && it->first < i)
it++;
if(it == end() || it->first != i)
break;
}
return std::max(i, 1);
int FieldManager::max_id()
{
if(!empty())
return rbegin()->first;
else
return 0;
void FieldManager::delete_field(int id)
{
iterator it = find(id);
if(it == end()) {
Msg(GERROR, "Cannot delete field id %i, it does not exist.", id);
return;
}
delete it->second;
erase(it);
double o[3], d[3];
int n[3];
double *data;
{
options["FileName"] = new FieldOptionString(file_name, &update_needed);
data = NULL;
}
const char *get_name()
{
return "Structured";
}
virtual ~StructuredField()
{
if(data) delete[]data;
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}
double operator() (double x, double y, double z)
{
if(update_needed) {
error_status = false;
try {
std::ifstream input(file_name.c_str());
if(!input.is_open())
throw(1);
input.
exceptions(std::ifstream::eofbit | std::ifstream::failbit | std::
ifstream::badbit);
input.read((char *)o, 3 * sizeof(double));
input.read((char *)d, 3 * sizeof(double));
input.read((char *)n, 3 * sizeof(int));
int nt = n[0] * n[1] * n[2];
if(data)
delete[]data;
data = new double[nt];
input.read((char *)data, nt * sizeof(double));
input.close();
}
catch(...) {
error_status = true;
Msg(GERROR, "Field %i : error reading file %s", this->id,
file_name.c_str());
}
update_needed = false;
}
if(error_status)
return MAX_LC;
//tri-linear
int id[2][3];
double xi[3];
double xyz[3] = { x, y, z };
for(int i = 0; i < 3; i++) {
id[0][i] = (int)floor((xyz[i] - o[i]) / d[i]);
id[1][i] = id[0][i] + 1;
id[0][i] = std::max(std::min(id[0][i], n[i] - 1), 0);
id[1][i] = std::max(std::min(id[1][i], n[i] - 1), 0);
xi[i] = (xyz[i] - (o[i] + id[0][i] * d[i])) / d[i];
xi[i] = std::max(std::min(xi[i], 1.), 0.);
}
double v = 0;
for(int i = 0; i < 2; i++)
for(int j = 0; j < 2; j++)
for(int k = 0; k < 2; k++) {
v += data[id[i][0] * n[1] * n[2] + id[j][1] * n[2] + id[k][2]]
* (i * xi[0] + (1 - i) * (1 - xi[0]))
* (j * xi[1] + (1 - j) * (1 - xi[1]))
* (k * xi[2] + (1 - k) * (1 - xi[2]));
}
return v;
}
FieldDialogBox *&dialog_box()
{
static FieldDialogBox *dialogBox = NULL;
return dialogBox;
}
LonLatField()
{
field_id = 1;
options["IField"] = new FieldOptionInt(field_id);
}
const char *get_name()
{
return "LonLat";
}
double operator() (double x, double y, double z)
{
return (*GModel::current()->getFields()->get(field_id))
(atan2(x, y), asin(z / sqrt(x * x + y * y + z * z)), 0);
}
FieldDialogBox *&dialog_box()
{
static FieldDialogBox *dialogBox = NULL;
return dialogBox;
}
double v_in, v_out, x_min, x_max, y_min, y_max, z_min, z_max;
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BoxField()
{
v_in = v_out = x_min = x_max = y_min = y_max = z_min = z_max = 0;
options["VIn"] = new FieldOptionDouble(v_in);
options["VOut"] = new FieldOptionDouble(v_out);
options["XMin"] = new FieldOptionDouble(x_min);
options["XMax"] = new FieldOptionDouble(x_max);
options["YMin"] = new FieldOptionDouble(y_min);
options["YMax"] = new FieldOptionDouble(y_max);
options["ZMin"] = new FieldOptionDouble(z_min);
options["ZMax"] = new FieldOptionDouble(z_max);
}
const char *get_name()
{
return "Box";
}
FieldDialogBox *&dialog_box()
{
static FieldDialogBox *dialogBox = NULL;
return dialogBox;
}
double operator() (double x, double y, double z)
{
return (x <= x_max && x >= x_min && y <= y_max && y >= y_min && z <= z_max
&& z >= z_min) ? v_in : v_out;
}
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const char *get_name()
{
return "Threshold";
}
ThresholdField()
{
iField = 0;
dmin = 1;
dmax = 10;
lcmin = 0.1;
lcmax = 1;
options["IField"] = new FieldOptionInt(iField);
options["DistMin"] = new FieldOptionDouble(dmin);
options["DistMax"] = new FieldOptionDouble(dmax);
options["LcMin"] = new FieldOptionDouble(lcmin);
options["LcMax"] = new FieldOptionDouble(lcmax);
}
double operator() (double x, double y, double z)
{
Field *field = GModel::current()->getFields()->get(iField);
double r = ((*field) (x, y, z) - dmin) / (dmax - dmin);
r = std::max(std::min(r, 1.), 0.);
double lc = lcmin * (1 - r) + lcmax * r;
return lc;
}
FieldDialogBox *&dialog_box()
{
static FieldDialogBox *dialogBox = NULL;
return dialogBox;
}
const char *get_name()
{
return "Gradient";
}
GradientField() : iField(0), kind(3), delta(CTX.lc / 1e4)
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{
options["IField"] = new FieldOptionInt(iField);
options["Kind"] = new FieldOptionInt(kind);
options["Delta"] = new FieldOptionDouble(delta);
}
double operator() (double x, double y, double z)
{
Field *field = GModel::current()->getFields()->get(iField);
double gx, gy, gz;
switch (kind) {
case 0: /* x */
return ((*field) (x + delta / 2, y, z) -
(*field) (x - delta / 2, y, z)) / delta;
case 1: /* y */
return ((*field) (x, y + delta / 2, z) -
(*field) (x, y - delta / 2, z)) / delta;
case 2: /* z */
return ((*field) (x, y, z + delta / 2) -
(*field) (x, y, z - delta / 2)) / delta;
case 3: /* norm */
gx =
((*field) (x + delta / 2, y, z) -
(*field) (x - delta / 2, y, z)) / delta;
gy =
((*field) (x, y + delta / 2, z) -
(*field) (x, y - delta / 2, z)) / delta;
gz =
((*field) (x, y, z + delta / 2) -
(*field) (x, y, z - delta / 2)) / delta;
return sqrt(gx * gx + gy * gy + gz * gz);
default:
Msg(GERROR, "Field %i : Unknown kind (%i) of gradient.", this->id,
kind);
return MAX_LC;
}
}
FieldDialogBox *&dialog_box()
{
static FieldDialogBox *dialogBox = NULL;
return dialogBox;
}
};
#if defined(HAVE_MATH_EVAL)
bool error_status;
std::list < Field * >*list;
int nvalues;
char **names;
double *values;
void *eval;
int *evaluators_id;
std::string function;
char *c_str_function;
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double evaluate(double x, double y, double z)
{
if(error_status)
return MAX_LC;
for(int i = 0; i < nvalues; i++)
{
Field *f;
switch (evaluators_id[i]) {
case -1:
values[i] = x;
break;
case -2:values[i] = y;
break;
case -3:values[i] = z;
break;
default:
{
f = GModel::current()->getFields()->get(evaluators_id[i]);
values[i] = f ? (*f) (x, y, z) : MAX_LC;
}
}
}
return evaluator_evaluate(eval, nvalues, names, values);
}
MathEvalExpression() {
eval = NULL;
values = NULL;
c_str_function = NULL;
evaluators_id = NULL;
}
bool set_function(const std::string & f)
{
free_members();
error_status = false;
c_str_function = strdup(f.c_str());
eval = evaluator_create(c_str_function);
if(!eval) {
error_status = true;
return false;
}
evaluator_get_variables(eval, &names, &nvalues);
values = new double[nvalues];
evaluators_id = new int[nvalues];
for(int i = 0; i < nvalues; i++) {
int id;
if(!strcmp("x", names[i]))
evaluators_id[i] = -1;
else if(!strcmp("y", names[i]))
evaluators_id[i] = -2;
else if(!strcmp("z", names[i]))
evaluators_id[i] = -3;
else if(sscanf(names[i], "F%i", &id) == 1)
evaluators_id[i] = id;
else {
Msg(GERROR, "Unknown matheval argument \"%s\"\n", names[i]);
error_status = true;
return false;
}
}
return true;
}
void free_members()
{
if(c_str_function)
free(c_str_function);
if(eval)
evaluator_destroy(eval);
if(values)
delete[]values;
if(evaluators_id)
delete evaluators_id;
}
~MathEvalExpression() {
free_members();
}
MathEvalField()
{
options["F"] = new FieldOptionString(f, &update_needed);
}
double operator() (double x, double y, double z)
{
if(update_needed) {
if(!expr.set_function(f))
Msg(GERROR, "Field %i : Invalid matheval expression \"%s\"\n",
this->id, f.c_str());
update_needed = false;
}
return expr.evaluate(x, y, z);
}
FieldDialogBox *&dialog_box()
{
static FieldDialogBox *dialogBox = NULL;
return dialogBox;
}
const char *get_name()
{
return "MathEval";
}
MathEvalExpression expr[3];
std::string f[3];
int ifield;
ParametricField()
{
options["IField"] = new FieldOptionInt(ifield);
options["FX"] = new FieldOptionString(f[0], &update_needed);
options["FY"] = new FieldOptionString(f[1], &update_needed);
options["FZ"] = new FieldOptionString(f[2], &update_needed);
}
double operator() (double x, double y, double z)
{
if(update_needed) {
for(int i = 0; i < 3; i++) {
if(!expr[i].set_function(f[i]))
Msg(GERROR, "Field %i : Invalid matheval expression \"%s\"\n",
this->id, f[i].c_str());
}
update_needed = false;
}
return (*GModel::current()->getFields()->get(ifield))
(expr[0].evaluate(x, y, z), expr[1].evaluate(x, y, z),
expr[2].evaluate(x, y, z));
}
FieldDialogBox *&dialog_box()
{
static FieldDialogBox *dialogBox = NULL;
return dialogBox;
}
const char *get_name()
{
return "Param";
}
double operator() (double x, double y, double z)
{
if(view_index < 0 || view_index >= (int)PView::list.size())
return MAX_LC;
if(octree)
delete octree;
octree = new OctreePost(PView::list[view_index]);
update_needed = false;
}
double l = 0.;
return l;
}
const char *get_name()
{
return "PostView";
}
octree = NULL;
options["IView"] = new FieldOptionInt(view_index, &update_needed);
}
if(octree)
delete octree;
}
FieldDialogBox *&dialog_box()
{
static FieldDialogBox *dialogBox = NULL;
return dialogBox;
}
MinField()
{
options["FieldsList"] = new FieldOptionList(idlist, &update_needed);
}
double operator() (double x, double y, double z)
{
double v = MAX_LC;
for(std::list < int >::iterator it = idlist.begin(); it != idlist.end();
it++) {
Field *f = (GModel::current()->getFields()->get(*it));
if(f)
v = std::min(v, (*f) (x, y, z));
}
return v;
}
FieldDialogBox *&dialog_box()
{
static FieldDialogBox *dialogBox = NULL;
return dialogBox;
}
const char *get_name()
{
return "Min";
}
class MaxField : public Field {
std::list<int> idlist;
public:
MaxField()
{
options["FieldsList"] = new FieldOptionList(idlist, &update_needed);
}
double operator() (double x, double y, double z)
{
double v = -MAX_LC;
for(std::list < int >::iterator it = idlist.begin(); it != idlist.end();
it++) {
Field *f = (GModel::current()->getFields()->get(*it));
if(f)
v = std::max(v, (*f) (x, y, z));
}
return v;
}
FieldDialogBox *&dialog_box()
{
static FieldDialogBox *dialogBox = NULL;
return dialogBox;
}
const char *get_name()
{
return "Max";
}
ANNpointArray zeronodes;
ANNidxArray index;
ANNdistArray dist;
std::list < int >nodes_id;
std::list < int >edges_id;
int n_nodes_by_edge;
public:
AttractorField() : kdtree(0), zeronodes(0)
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{
index = new ANNidx[1];
dist = new ANNdist[1];
options["NodesList"] = new FieldOptionList(nodes_id, &update_needed);
options["EdgesList"] = new FieldOptionList(edges_id, &update_needed);
options["NNodesByEdge"] =
new FieldOptionInt(n_nodes_by_edge, &update_needed);
n_nodes_by_edge = 20;
}
~AttractorField()
{
if(kdtree)
delete kdtree;
if(zeronodes)
annDeallocPts(zeronodes);
delete[]index;
delete[]dist;
}
const char *get_name()
{
return "Attractor";
}
virtual double operator() (double X, double Y, double Z)
{
if(update_needed) {
if(zeronodes) {
annDeallocPts(zeronodes);
delete kdtree;
}
int totpoints = nodes_id.size() + n_nodes_by_edge * edges_id.size();
if(totpoints)
zeronodes = annAllocPts(totpoints, 4);
int k = 0;
for(std::list < int >::iterator it = nodes_id.begin();
it != nodes_id.end(); ++it) {
Vertex *v = FindPoint(*it);
if(v) {
zeronodes[k][0] = v->Pos.X;
zeronodes[k][1] = v->Pos.Y;
zeronodes[k++][2] = v->Pos.Z;
}
else {
GVertex *gv = GModel::current()->getVertexByTag(*it);
if(gv) {
zeronodes[k][0] = gv->x();
zeronodes[k][1] = gv->y();
zeronodes[k++][2] = gv->z();
}
}
}
for(std::list < int >::iterator it = edges_id.begin();
it != edges_id.end(); ++it) {
Curve *c = FindCurve(*it);
if(c) {
for(int i = 0; i < n_nodes_by_edge; i++) {
double u = (double)i / (n_nodes_by_edge - 1);
Vertex V = InterpolateCurve(c, u, 0);
zeronodes[k][0] = V.Pos.X;
zeronodes[k][1] = V.Pos.Y;
zeronodes[k++][2] = V.Pos.Z;
}
}
else {
GEdge *ge = GModel::current()->getEdgeByTag(*it);
if(ge) {
for(int i = 0; i < n_nodes_by_edge; i++) {
double u = (double)i / (n_nodes_by_edge - 1);
Range < double >b = ge->parBounds(0);
double t = b.low() + u * (b.high() - b.low());
GPoint gp = ge->point(t);
zeronodes[k][0] = gp.x();
zeronodes[k][1] = gp.y();
zeronodes[k++][2] = gp.z();
}
}
}
}
kdtree = new ANNkd_tree(zeronodes, totpoints, 3);
update_needed = false;
}
double xyz[3] = { X, Y, Z };
kdtree->annkSearch(xyz, 1, index, dist);
return sqrt(dist[0]);
}
FieldDialogBox *&dialog_box()
{
static FieldDialogBox *dialogBox = NULL;
return dialogBox;
}
template<class F> class FieldFactoryT : public FieldFactory {
public:
Field *operator()()
{
map_type_name["Structured"] = new FieldFactoryT<StructuredField> ();
map_type_name["Threshold"] = new FieldFactoryT<ThresholdField> ();
map_type_name["Box"] = new FieldFactoryT<BoxField> ();
map_type_name["LonLat"] = new FieldFactoryT<LonLatField> ();
map_type_name["Param"] = new FieldFactoryT<ParametricField> ();
map_type_name["MathEval"] = new FieldFactoryT<MathEvalField> ();
map_type_name["Attractor"] = new FieldFactoryT<AttractorField> ();
map_type_name["PostView"] = new FieldFactoryT<PostViewField> ();
map_type_name["Gradient"] = new FieldFactoryT<GradientField> ();
map_type_name["Min"] = new FieldFactoryT< MinField> ();
map_type_name["Max"] = new FieldFactoryT< MaxField> ();
static void evaluate(Field * field, List_T * list1, int nbElm1, int nbNod,
int nbComp, int comp)
int nb = List_Nbr(list1) / nbElm1;
for(int i = 0; i < List_Nbr(list1); i += nb) {
double *x = (double *)List_Pointer_Fast(list1, i);
double *y = (double *)List_Pointer_Fast(list1, i + nbNod);
double *z = (double *)List_Pointer_Fast(list1, i + 2 * nbNod);
for(int j = 0; j < nbNod; j++) {
// store data from the main view into v
double *val1 = (double *)List_Pointer_Fast(list1,
i + 3 * nbNod +
nbNod * nbComp * 0 +
nbComp * j);
val1[comp] = (*field) (x[j], y[j], z[j]);
PViewDataList *data = dynamic_cast < PViewDataList * >(view->getData());
if(!data)
return;
evaluate(this, data->SP, data->NbSP, 1, 1, 0);
evaluate(this, data->SL, data->NbSL, 2, 1, 0);
evaluate(this, data->ST, data->NbST, 3, 1, 0);
evaluate(this, data->SS, data->NbSS, 4, 1, 0);
evaluate(this, data->SI, data->NbSI, 6, 1, 0);
evaluate(this, data->SY, data->NbSY, 5, 1, 0);
for(int cc = 0; cc < 3; cc++) {
if(comp < 0 || comp == cc) {
evaluate(this, data->VP, data->NbVP, 1, 3, cc);
evaluate(this, data->VL, data->NbVL, 2, 3, cc);
evaluate(this, data->VT, data->NbVT, 3, 3, cc);
evaluate(this, data->VQ, data->NbVQ, 4, 3, cc);
evaluate(this, data->VS, data->NbVS, 4, 3, cc);
evaluate(this, data->VH, data->NbVH, 8, 3, cc);
evaluate(this, data->VI, data->NbVI, 6, 3, cc);
evaluate(this, data->VY, data->NbVY, 5, 3, cc);
}
}
for(int cc = 0; cc < 9; cc++) {
if(comp < 0 || comp == cc) {
evaluate(this, data->TP, data->NbTP, 1, 9, cc);
evaluate(this, data->TL, data->NbTL, 2, 9, cc);
evaluate(this, data->TQ, data->NbTQ, 4, 9, cc);
evaluate(this, data->TS, data->NbTS, 4, 9, cc);
evaluate(this, data->TH, data->NbTH, 8, 9, cc);
evaluate(this, data->TI, data->NbTI, 6, 9, cc);
evaluate(this, data->TY, data->NbTY, 5, 9, cc);
}
}
data->finalize();
view->setChanged(true);
}
void FieldManager::set_background_mesh(int iView)
{
int id = new_id();
Field *f = new_field(id, "PostView");
f->options["IView"]->numerical_value(iView);
(*this)[id] = f;
background_field = id;