oops

README.txt

@@ -55,8 +55,8 @@ Among other (and possibly optional) dependencies, GetDP relies on PETSc:
   https://www.mcs.anl.gov/petsc
 The shell script dependencies.sh should handle this automatically if you run:
   ./dependencies.sh
-This script needs git. Don't forget to update your PYTHONPATH and
-LD_LIBRARY_PATH as instructed.
+You will need wget, tar, gcc, g++ and gfortran for this script to work.
+Don't forget to update your PATH, PYTHONPATH and LD_LIBRARY_PATH as instructed.
 
 If you want to handle the PETSc and GetDP libraries yourself, here are the
 options you will need. The PETSc library should be compiled with the following
@@ -79,5 +79,6 @@ following options:
   ENABLE_WRAP_PYTHON:   ON
 If everything went fine, you should end up with the GetDP Python module:
   getdp.py
+Finally, Don't forget to update your PATH, PYTHONPATH and LD_LIBRARY_PATH.
 
 Enjoy!

dependencies.sh

 #!/bin/sh
+## Dependencies folder ##
+#########################
 echo "Creating dependencies folder: dep/"
 mkdir dep
+cd dep
 
-echo "Cloning PETSc"
-git clone -b maint https://bitbucket.org/petsc/petsc dep/petsc
+## BLAS ##
+##########
+echo "Downloading OpenBLAS"
+wget http://github.com/xianyi/OpenBLAS/archive/v0.2.19.tar.gz
+
+echo "Extracting OpenBLAS"
+tar xf v0.2.19.tar.gz
+
+echo "Entering OpenBLAS"
+cd OpenBLAS-0.2.19
+BLAS=$(pwd)
+
+echo "Compiling OpenBLAS"
+make
+
+echo "Leaving OpenBLAS"
+cd ..
+
+## PETSc ##
+###########
+echo "Downloading PETSc"
+wget http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.7.5.tar.gz
+
+echo "Extracting PETSc"
+tar xf petsc-3.7.5.tar.gz
 
 echo "Entering PETSc"
-PETSC_DIR=$(pwd)/dep/petsc
+cd petsc-3.7.5
+PETSC_DIR=$(pwd)
 PETSC_ARCH=linux-gnu-cxx-seq
 PETSC=$PETSC_DIR"/"$PETSC_ARCH
-cd dep/petsc
 
 echo "Configuring PETSc"
 ./configure --with-clanguage=cxx --with-shared-libraries=1 --with-x=0 \
             --with-scalar-type=complex --with-mumps-serial=yes --with-mpi=0 \
-            --with-mpiuni-fortran-binding=0 --download-mumps=yes
+            --with-mpiuni-fortran-binding=0 --download-mumps=yes \
+            --with-blas-lapack-lib=$BLAS/libopenblas.so
 
 echo "Compiling PETSc"
 make all
@@ -25,11 +52,16 @@ make test
 echo "Leaving PETSc"
 cd ..
 
-echo "Cloning GetDP"
-git clone http://gitlab.onelab.info/getdp/getdp.git getdp
+## GetDP ##
+###########
+echo "Downloading GetDP"
+wget http://getdp.info/src/getdp-2.11.0-source.tgz
+
+echo "Extracting GetDP"
+tar xf getdp-2.11.0-source.tgz
 
 echo "Entering GetDP"
-cd getdp
+cd getdp-2.11.0-source
 
 echo "Configuring GetDP"
 mkdir build
@@ -45,12 +77,18 @@ make
 echo "Leaving GetDP"
 cd ../../..
 
+## PATH ##
+##########
 echo "   "
 echo "+++"
 echo "PETSc and GetDP should be now compiled with the required features."
 echo "In order to use cim.py, a few additional steps are required."
 echo "We still need to add the libraries and the Python module in your path."
-echo "Please add the following in your .bashrc file (or equivalent):"
-echo "export PYTHONPATH="$GETDP":\$PYTHONPATH"
-echo "export LD_LIBRARY_PATH="$PETSC"/lib:"$GETDP":\$LD_LIBRARY_PATH"
+echo "Please add the following in your ~/.bashrc file (or equivalent):"
+echo "export PATH=\$PATH:"$(pwd)"/bin"
+echo "export PYTHONPATH=\$PYTHONPATH:"$GETDP
+echo "export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:"$PETSC"/lib:"$GETDP":"$BLAS
 echo "+++"
+
+## Enjoy ! ##
+#############

example/Makefile

-SRC=..
+BIN=../bin
 
 test:
 	@echo "make cim: run the countour integral solver"
@@ -8,7 +8,7 @@ ref: init
 	getdp ref.pro -solve Eig -pos Eig -msh square.msh
 
 cim: init
-	python ${SRC}/cim.py maxwell.pro square.msh Maxwell Maxwell 9e8 1e8
+	python ${BIN}/cim.py maxwell.pro square.msh Maxwell Maxwell 9e8 1e8
 
 init:
 	gmsh square.geo -2