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Commit e973116f authored by Ludovic Noels (l.noels@uliege.be)'s avatar Ludovic Noels (l.noels@uliege.be)
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running on hercules

parent 12f20959
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......@@ -9,6 +9,8 @@
#SBATCH --mem-per-cpu=800
#SBATCH --time=0:20:0
module load GCCcore/5.4.0
module load ifort/2016.3.210-GCC-5.4.0-2.26
SUBDIR=$HOME/cm3Libraries/dG3D/benchmarks/taylorMPI
echo "subdir=" $SUBDIR
......@@ -36,8 +38,8 @@ export PATH=$HOME/local/bin:$PATH
export PATH=$PATH:$HOME/cm3Libraries/dG3D/release
export PATH=$PATH:$HOME/cm3Libraries/dG3D/release/NonLinearSolver/gmsh
export PYTHONPATH=$PYTHONPATH:$HOME/gmsh/projects/dG3D/release:$HOME/gmsh/projects/dG3D/release/NonLinearSolver/gmsh/utils/wrappers:$HOME/gmsh/projects/dG3D/release/NonLinearSolver/gmsh/utils/wrappers/gmshpy
export PYTHONPATH=$PYTHONPATH:$HOME/cm3Libraries/dG3D/release:$HOME/cm3Libraries/dG3D/release/NonLinearSolver/gmsh/utils/wrappers:$HOME/cm3Libraries/dG3D/release/NonLinearSolver/gmsh/utils/wrappers/gmshpy
mpirun python $SCRATCH/$pyfile > $SCRATCH/output.txt 2>&1
......
......@@ -29,9 +29,9 @@ else:
else:
if tmpo not in lnodes:
lnodes.append(tmpo)
system("ssh %s rm -r /tmpscratch/lnoels_%d"%(tmpo,simnum)) # nic3
#system("ssh %s rm -r /scratch/gbecker_%d"%(tmpo,simnum)) # dragon
system("ssh %s rm -r /workdir/lnoels/%d"%(tmpo,simnum)) # hercules
#system("ssh %s rm -r /scratch/lnoels_%d"%(tmpo,simnum)) # dragon
#system("ssh %s rm -r /tmp/lnoels_%d"%(tmpo,simnum)) # vega
#print "ssh %s rm -r /tmpscratch/gbecker_%d"%(tmpo,simnum)
#print "ssh %s rm -r /tmpscratch/lnoels_%d"%(tmpo,simnum)
print "clear scratch OK"
......@@ -29,9 +29,9 @@ else:
else:
if tmpo not in lnodes:
lnodes.append(tmpo)
system("scp %s:/tmpscratch/lnoels_%d/* ."%(tmpo,simnum)) # nic3
system("scp %s:/workdir/lnoels/%d/* ."%(tmpo,simnum)) # hercules
#system("scp %s:/scratch/lnoels_%d/* ."%(tmpo,simnum)) # dragon
system("scp %s:/tmp/lnoels_%d/* ."%(tmpo,simnum)) # vega`
#print "ssh %s rm -r /tmpscratch/gbecker_%d"%(tmpo,simnum)
#system("scp %s:/tmp/lnoels_%d/* ."%(tmpo,simnum)) # vega`
#print "ssh %s rm -r /tmpscratch/lnoels_%d"%(tmpo,simnum)
print "copy scratch OK"
......@@ -279,7 +279,8 @@ Then wait until the job end (the last line of the created file "petsc-install.ou
export PATH=$PATH:$HOME/cm3Libraries/cm3apps/release/NonLinearSolver/gmsh
export PATH=$PATH:$HOME/cm3Libraries/dG3D/debug/NonLinearSolver/gmsh
export PATH=$PATH:$HOME/cm3Libraries/dG3D/release/NonLinearSolver/gmsh
export PYTHONPATH=$PYTHONPATH:$HOME/gmsh/projects/dG3D/release:$HOME/gmsh/projects/dG3D/release/NonLinearSolver/gmsh/utils/wrappers:$HOME/gmsh/projects/dG3D/release/NonLinearSolver/gmsh/utils/wrappers/gmshpy
export PYTHONPATH=$PYTHONPATH:$HOME/cm3Libraries/dG3D/release:$HOME/cm3Libraries/dG3D/release/NonLinearSolver/gmsh/utils/wrappers:$HOME/cm3Libraries/dG3D/release/NonLinearSolver/gmsh/utils/wrappers/gmshpy
......
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