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Edges container change

Darcy Beurle requested to merge perf into master

The majority of this is changing the container from std::list to std::vector. Most of the call sites bind by const& when a copy isn't required, which will result in less memory allocation when #399 (closed) is resolved.

Compiler warnings were also fixed for the use of potentially uninitialised member variables in Tuple.

Removed calls to C library and replaced with std::abs where possible.

Left breadcrumbs for C++11 cleanups.

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