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C++11 todo fixes

Darcy Beurle requested to merge c++11-todo-fixes into master

This merge request addresses all the todo notes left as part of the C++11 upgrade to move from raw loops to algorithms.

Some interesting side effects: remove several instances of dynamic allocations and removed some dead code. Lots of complicated logic drops out so readability should be improved.

Edited by Darcy Beurle

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