Segmentation fault when running getdp from gmsh (gmsh-2.12.0, getdp 2.8)
Hi,
I receive the following error when trying to run OneLAB from gmsh:
[quaxo:12456] *** Process received signal *** [quaxo:12456] Signal: Segmentation fault (11) [quaxo:12456] Signal code: (128) [quaxo:12456] Failing at address: (nil) [quaxo:12456] [ 0] /lib64/libpthread.so.0(+0xf670)[0x2ada824b8670] [quaxo:12456] [ 1] /opt/gmsh/lib/libGmsh.so.2.12(_ZNSt8_Rb_treeIP4CellSt4pairIKS1_6BdInfoESt10_Select1stIS5_E9Less_CellSaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E+0x24)[0x2ada7b7ae794] [quaxo:12456] [ 2] /usr/lib64/octave/4.0.1/liboctinterp.so.3(_ZN10octave_mapD2Ev+0x28)[0x2ada807ae078] [quaxo:12456] [ 3] /usr/lib64/octave/4.0.1/liboctinterp.so.3(_Z32initialize_default_warning_statev+0x124)[0x2ada80d087e4] [quaxo:12456] [ 4] /usr/lib64/octave/4.0.1/liboctinterp.so.3(octave_initialize_interpreter+0x1b5)[0x2ada807a99e5] [quaxo:12456] [ 5] /usr/lib64/octave/4.0.1/liboctinterp.so.3(octave_main+0x28)[0x2ada807ab028] [quaxo:12456] [ 6] /opt/GetDP/bin/getdp(_ZN7Message10InitializeEiPPc+0x28f)[0x4303af] [quaxo:12456] [ 7] /opt/GetDP/bin/getdp(_Z10MainLegacyiPPc+0x99)[0x48d479] [quaxo:12456] [ 8] /opt/GetDP/bin/getdp(main+0x13)[0x42ad13] [quaxo:12456] [ 9] /lib64/libc.so.6(__libc_start_main+0xf5)[0x2ada83218d05] [quaxo:12456] [10] /opt/GetDP/bin/getdp[0x42b78d] [quaxo:12456] *** End of error message *** [quaxo:12460] *** Process received signal *** [quaxo:12460] Signal: Segmentation fault (11) [quaxo:12460] Signal code: (128) [quaxo:12460] Failing at address: (nil) [quaxo:12460] [ 0] /lib64/libpthread.so.0(+0xf670)[0x2b23970f3670] [quaxo:12460] [ 1] /opt/gmsh/lib/libGmsh.so.2.12(_ZNSt8_Rb_treeIP4CellSt4pairIKS1_6BdInfoESt10_Select1stIS5_E9Less_CellSaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E+0x24)[0x2b23903e9794] [quaxo:12460] [ 2] /usr/lib64/octave/4.0.1/liboctinterp.so.3(_ZN10octave_mapD2Ev+0x28)[0x2b23953e9078] [quaxo:12460] [ 3] /usr/lib64/octave/4.0.1/liboctinterp.so.3(_Z32initialize_default_warning_statev+0x124)[0x2b23959437e4] [quaxo:12460] [ 4] /usr/lib64/octave/4.0.1/liboctinterp.so.3(octave_initialize_interpreter+0x1b5)[0x2b23953e49e5] [quaxo:12460] [ 5] /usr/lib64/octave/4.0.1/liboctinterp.so.3(octave_main+0x28)[0x2b23953e6028] [quaxo:12460] [ 6] /opt/GetDP/bin/getdp(_ZN7Message10InitializeEiPPc+0x28f)[0x4303af] [quaxo:12460] [ 7] /opt/GetDP/bin/getdp(_Z10MainLegacyiPPc+0x99)[0x48d479] [quaxo:12460] [ 8] /opt/GetDP/bin/getdp(main+0x13)[0x42ad13] [quaxo:12460] [ 9] /lib64/libc.so.6(__libc_start_main+0xf5)[0x2b2397e53d05] [quaxo:12460] [10] /opt/GetDP/bin/getdp[0x42b78d] [quaxo:12460] *** End of error message ***
I'm not sure what is going on? Maybe I am compiling getdp wrong. I have openmpi 1.10.2, PetSC 3.6.3 and octave 4.0.1 installed on Slackware64-14.1 Previous versions of gmsh and getdp worked very well.
If this has been covered previously, my apologies. Otherwise, thank you for gmsh, getdp and all of your work.
Cheers,
Fred