From d5df061f4d8ce0053834df6c245ddc33069ebd85 Mon Sep 17 00:00:00 2001
From: Guillaume Demesy <guillaume.demesy@fresnel.fr>
Date: Wed, 1 Feb 2023 18:32:38 +0100
Subject: [PATCH] update split torus to U-shape
---
DiffractionGratings/README.txt | 2 +-
DiffractionGratings/grating2D_scalar.pro | 2 +
DiffractionGratings/grating3D.geo | 16 ++-
DiffractionGratings/grating3D.pro | 13 +-
DiffractionGratings/grating3D_data.geo | 4 +-
.../grating3D_data_bi_sinusoidal.geo | 2 +-
.../grating3D_data_checker.geo | 2 +-
.../grating3D_data_convergence.geo | 2 +-
.../grating3D_data_half_ellipsoid.geo | 2 +-
DiffractionGratings/grating3D_data_hole.geo | 2 +-
.../grating3D_data_nanowire_solarcell.geo | 2 +-
.../grating3D_data_pyramid.geo | 2 +-
.../grating3D_data_retrieve_2D_lamellar.geo | 2 +-
.../grating3D_data_skewed_lattice.geo | 2 +-
DiffractionGratings/grating3D_data_torus.geo | 125 ------------------
.../grating3D_parallel_Mmatrix.sh | 4 +-
DiffractionGratings/grating3D_runall.sh | 4 +-
.../scattererTmatrix.geo | 2 +-
.../scattererTmatrix_data.geo | 10 +-
ElectromagneticScattering/scattering_data.geo | 10 +-
20 files changed, 53 insertions(+), 157 deletions(-)
delete mode 100644 DiffractionGratings/grating3D_data_torus.geo
diff --git a/DiffractionGratings/README.txt b/DiffractionGratings/README.txt
index 51f6270..9c4559e 100644
--- a/DiffractionGratings/README.txt
+++ b/DiffractionGratings/README.txt
@@ -11,7 +11,7 @@ Quick start 3D
To run the test cases, type in terminal :
gmsh grating3D.pro -setstring test_case pyramid
gmsh grating3D.pro -setstring test_case hole
-gmsh grating3D.pro -setstring test_case torus
+gmsh grating3D.pro -setstring test_case U
gmsh grating3D.pro -setstring test_case half_ellipsoid
gmsh grating3D.pro -setstring test_case checker
gmsh grating3D.pro -setstring test_case bisin
diff --git a/DiffractionGratings/grating2D_scalar.pro b/DiffractionGratings/grating2D_scalar.pro
index 740f7d8..44cdaae 100644
--- a/DiffractionGratings/grating2D_scalar.pro
+++ b/DiffractionGratings/grating2D_scalar.pro
@@ -372,6 +372,7 @@ Resolution {
PostProcessing {
{ Name postpro_energy; NameOfFormulation helmoltz_scalar;
Quantity {
+ { Name SSize ; Value { Local { [ $KSPSystemSize ]; In Omega; Jacobian JVol; } } }
{ Name u ; Value { Local { [ {u2d} ]; In Omega; Jacobian JVol; } } }
{ Name u_diff ; Value { Local { [ {u2d}+u1d[] ]; In Omega; Jacobian JVol; } } }
{ Name u_tot ; Value { Local { [ {u2d}+u1[] ]; In Omega; Jacobian JVol; } } }
@@ -422,6 +423,7 @@ PostProcessing {
PostOperation {
{ Name postop_energy; NameOfPostProcessing postpro_energy ;
Operation {
+ Print[ SSize, OnPoint{0,0,0}, Format Table, File > StrCat[myDir, "SSize.txt"]] ;
Print[ lambda_step, OnPoint{0,0,0}, Format Table, File > StrCat[myDir, "temp_lambda_step.txt"], SendToServer "GetDP/Lambda_step" ] ;
For i In {0:2*nb_orders}
Print[ s_r~{i}[SurfCutSuper1], OnGlobal, StoreInVariable $sr~{i}, Format Table , File > StrCat[myDir, Sprintf("temp_s_r_%g.txt", i-nb_orders)]];
diff --git a/DiffractionGratings/grating3D.geo b/DiffractionGratings/grating3D.geo
index a2671b5..36d3e59 100644
--- a/DiffractionGratings/grating3D.geo
+++ b/DiffractionGratings/grating3D.geo
@@ -186,9 +186,17 @@ If (tag_geom==2)
EndIf
If (tag_geom==3)
- Torus(9) = {0,0,hh_L_3+ry-1*nm,rx,ry};
- Dilate { { 0,0,hh_L_3 }, { 1, 1, rz/ry } } { Volume{9}; }
- BooleanDifference{ Volume{9}; Delete; }{ Volume{4}; }
+ Lx = 210*nm;
+ Ly = 232*nm;
+ Box(9) = {-Lx/2 , -Ly/2 , hh_L_3 , Lx, ry, rz};
+ Box(10) = {-Lx/2 , Ly/2-ry , hh_L_3 , Lx, ry, rz};
+ Box(11) = {-Lx/2 , -Ly/2 , hh_L_3 , rx, Ly, rz};
+ r_fillet = 15*nm;
+ scat() = BooleanUnion{ Volume{9}; Delete; }{ Volume{10,11}; Delete;} ;
+ fscat() = Abs(Boundary{ Volume{scat()} ; });
+ escat() = Unique(Abs(Boundary{ Surface{fscat()}; }));
+ Fillet{scat()}{escat()}{r_fillet}
+
EndIf
If (tag_geom==4)
@@ -283,7 +291,7 @@ For k In {0:8}
EndFor
-If (tag_geom==3) // Split torus weird otherwise
+If (tag_geom==3) // Split U weird otherwise
Mesh.Algorithm = 6;
EndIf
// Mesh.SurfaceEdges = 0;
diff --git a/DiffractionGratings/grating3D.pro b/DiffractionGratings/grating3D.pro
index 64f8f70..eb066f2 100644
--- a/DiffractionGratings/grating3D.pro
+++ b/DiffractionGratings/grating3D.pro
@@ -438,9 +438,17 @@ PostProcessing {
Vector[$int_x_r~{ispecular}~{jspecular},
$int_y_r~{ispecular}~{jspecular},
$int_z_r~{ispecular}~{jspecular}] ] ; In SurfIntTop ; } } }
+ { Name et_specular ; Value { Term{Type Global; [
+ Vector[$int_x_t~{ispecular}~{jspecular},
+ $int_y_t~{ispecular}~{jspecular},
+ $int_z_t~{ispecular}~{jspecular}] ] ; In SurfIntBot ; } } }
+
// Project er_specular on the (s,p) basis
{ Name rp ; Value { Term{ Type Global; [ ppol[] * $er_specular] ; In SurfIntTop ; } } }
{ Name rs ; Value { Term{ Type Global; [ spol[] * $er_specular] ; In SurfIntTop ; } } }
+ { Name tp ; Value { Term{ Type Global; [ ppol[] * $et_specular] ; In SurfIntBot ; } } }
+ { Name ts ; Value { Term{ Type Global; [ spol[] * $et_specular] ; In SurfIntBot ; } } }
+
}
}
}
@@ -524,8 +532,11 @@ PostOperation {
EndFor
EndFor
Print[ er_specular[SurfIntTop] , OnRegion SurfIntTop, StoreInVariable $er_specular, Format Table];
+ Print[ et_specular[SurfIntBot] , OnRegion SurfIntBot, StoreInVariable $et_specular, Format Table];
Print[ rp[SurfIntTop], OnRegion SurfIntTop, File > StrCat[myDir,"rp.txt"], Format Table ];
- Print[ rs[SurfIntTop], OnRegion SurfIntTop, File > StrCat[myDir,"rs.txt"], Format Table ];
+ Print[ rs[SurfIntTop], OnRegion SurfIntTop, File > StrCat[myDir,"rs.txt"], Format Table ];
+ Print[ tp[SurfIntBot], OnRegion SurfIntBot, File > StrCat[myDir,"tp.txt"], Format Table ];
+ Print[ ts[SurfIntBot], OnRegion SurfIntBot, File > StrCat[myDir,"ts.txt"], Format Table ];
For i In {0:Nb_ordre-1}
For j In {0:Nb_ordre-1}
Print[ numbering_ij~{i}~{j}[SurfIntBot], OnRegion SurfIntBot, File > StrCat[myDir,"numbering_ij.txt"], Format Table ];
diff --git a/DiffractionGratings/grating3D_data.geo b/DiffractionGratings/grating3D_data.geo
index 4862669..a82fe6f 100644
--- a/DiffractionGratings/grating3D_data.geo
+++ b/DiffractionGratings/grating3D_data.geo
@@ -1,8 +1,8 @@
DefineConstant[
- test_case = {"half_ellipsoid",
+ test_case = {"U",
Name "1Geometry",
- Choices {"half_ellipsoid", "hole", "pyramid", "torus", "bi_sinusoidal", "retrieve_2D_lamellar", "nanowire_solarcell", "convergence", "skewed_lattice"},
+ Choices {"half_ellipsoid", "hole", "pyramid", "U", "bi_sinusoidal", "retrieve_2D_lamellar", "nanowire_solarcell", "convergence", "skewed_lattice"},
GmshOption "Reset", Autocheck 0
}
];
diff --git a/DiffractionGratings/grating3D_data_bi_sinusoidal.geo b/DiffractionGratings/grating3D_data_bi_sinusoidal.geo
index 216ef0b..3fe136d 100644
--- a/DiffractionGratings/grating3D_data_bi_sinusoidal.geo
+++ b/DiffractionGratings/grating3D_data_bi_sinusoidal.geo
@@ -21,7 +21,7 @@ DefineConstant[
thick_L_6 = {200 , Name StrCat[pp2,"/8thickness layer 6 [nm] (substrate)"]},
xsideg = {0 , Name StrCat[pp2,"/9skew angle [deg]"],Visible 1},
- tag_geom = { 6 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="Torus",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
+ tag_geom = { 6 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="U",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
rx = {1.25*lambda0, Name StrCat[pp3,"/1rx"]},
ry = {1.25*lambda0, Name StrCat[pp3,"/2ry"]},
rz = { 200 , Name StrCat[pp3,"/3rz"]},
diff --git a/DiffractionGratings/grating3D_data_checker.geo b/DiffractionGratings/grating3D_data_checker.geo
index 2e43fc2..2a34d7d 100644
--- a/DiffractionGratings/grating3D_data_checker.geo
+++ b/DiffractionGratings/grating3D_data_checker.geo
@@ -21,7 +21,7 @@ DefineConstant[
thick_L_6 = {50 , Name StrCat[pp2,"/8thickness layer 6 [nm] (substrate)"]},
xsideg = {0 , Name StrCat[pp2,"/9skew angle [deg]"],Visible 1},
- tag_geom = { 5 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="Torus",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
+ tag_geom = { 5 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="U",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
rx = {1.25*lambda0, Name StrCat[pp3,"/1rx"]},
ry = {1.25*lambda0, Name StrCat[pp3,"/2ry"]},
rz = {lambda0 , Name StrCat[pp3,"/3rz"]},
diff --git a/DiffractionGratings/grating3D_data_convergence.geo b/DiffractionGratings/grating3D_data_convergence.geo
index fff7de0..ded4ddd 100644
--- a/DiffractionGratings/grating3D_data_convergence.geo
+++ b/DiffractionGratings/grating3D_data_convergence.geo
@@ -21,7 +21,7 @@ DefineConstant[
thick_L_6 = {50 , Name StrCat[pp2,"/8thickness layer 6 [nm] (substrate)"]},
xsideg = {0 , Name StrCat[pp2,"/9skew angle [deg]"],Visible 1},
- tag_geom = { 4 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="Torus",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
+ tag_geom = { 4 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="U",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
rx = {107 , Name StrCat[pp3,"/1rx"]},
ry = {47 , Name StrCat[pp3,"/2ry"]},
rz = {40 , Name StrCat[pp3,"/3rz"]},
diff --git a/DiffractionGratings/grating3D_data_half_ellipsoid.geo b/DiffractionGratings/grating3D_data_half_ellipsoid.geo
index 6ae275a..07906f9 100644
--- a/DiffractionGratings/grating3D_data_half_ellipsoid.geo
+++ b/DiffractionGratings/grating3D_data_half_ellipsoid.geo
@@ -21,7 +21,7 @@ DefineConstant[
thick_L_6 = {50 , Name StrCat[pp2,"/8thickness layer 6 [nm] (substrate)"]},
xsideg = {0 , Name StrCat[pp2,"/9skew angle [deg]"],Visible 1},
- tag_geom = { 4 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="Torus",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
+ tag_geom = { 4 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="U",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
rx = {107 , Name StrCat[pp3,"/1rx"]},
ry = {47 , Name StrCat[pp3,"/2ry"]},
rz = {40 , Name StrCat[pp3,"/3rz"]},
diff --git a/DiffractionGratings/grating3D_data_hole.geo b/DiffractionGratings/grating3D_data_hole.geo
index 32bf712..1298f1a 100644
--- a/DiffractionGratings/grating3D_data_hole.geo
+++ b/DiffractionGratings/grating3D_data_hole.geo
@@ -27,7 +27,7 @@ DefineConstant[
thick_L_6 = {100 , Name StrCat[pp2,"/8thickness layer 6 [nm] (substrate)"]},
xsideg = {0 , Name StrCat[pp2,"/9skew angle [deg]"],Visible 1},
- tag_geom = { 2 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="Torus",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
+ tag_geom = { 2 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="U",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
rx = {250 , Name StrCat[pp3,"/1rx"]},
ry = {47 , Name StrCat[pp3,"/2ry"]},
rz = {500 , Name StrCat[pp3,"/3rz"]},
diff --git a/DiffractionGratings/grating3D_data_nanowire_solarcell.geo b/DiffractionGratings/grating3D_data_nanowire_solarcell.geo
index ccfd3c9..3a218f2 100644
--- a/DiffractionGratings/grating3D_data_nanowire_solarcell.geo
+++ b/DiffractionGratings/grating3D_data_nanowire_solarcell.geo
@@ -22,7 +22,7 @@ DefineConstant[
thick_L_6 = {25 , Name StrCat[pp2,"/8thickness layer 6 [nm] (substrate)"]},
xsideg = {0 , Name StrCat[pp2,"/9skew angle [deg]"],Visible 1},
- tag_geom = { 2 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="Torus",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
+ tag_geom = { 2 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="U",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
rx = { 50 , Name StrCat[pp3,"/1rx"]},
ry = {47 , Name StrCat[pp3,"/2ry"]},
rz = {400 , Name StrCat[pp3,"/3rz"]},
diff --git a/DiffractionGratings/grating3D_data_pyramid.geo b/DiffractionGratings/grating3D_data_pyramid.geo
index 579361b..342c2bf 100644
--- a/DiffractionGratings/grating3D_data_pyramid.geo
+++ b/DiffractionGratings/grating3D_data_pyramid.geo
@@ -21,7 +21,7 @@ DefineConstant[
thick_L_6 = {50 , Name StrCat[pp2,"/8thickness layer 6 [nm] (substrate)"]},
xsideg = {0 , Name StrCat[pp2,"/9skew angle [deg]"],Visible 1},
- tag_geom = { 1 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="Torus",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
+ tag_geom = { 1 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="U",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
rx = {107 , Name StrCat[pp3,"/1rx"]},
ry = {250 , Name StrCat[pp3,"/2ry"]},
rz = {250 , Name StrCat[pp3,"/3rz"]},
diff --git a/DiffractionGratings/grating3D_data_retrieve_2D_lamellar.geo b/DiffractionGratings/grating3D_data_retrieve_2D_lamellar.geo
index 83f95d7..9a915e1 100644
--- a/DiffractionGratings/grating3D_data_retrieve_2D_lamellar.geo
+++ b/DiffractionGratings/grating3D_data_retrieve_2D_lamellar.geo
@@ -21,7 +21,7 @@ DefineConstant[
thick_L_6 = {100 , Name StrCat[pp2,"/8thickness layer 6 [nm] (substrate)"]},
xsideg = {0 , Name StrCat[pp2,"/9skew angle [deg]"],Visible 1},
- tag_geom = { 7 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="Torus",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
+ tag_geom = { 7 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="U",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
rx = { 0 , Name StrCat[pp3,"/1rx"]},
ry = {500 , Name StrCat[pp3,"/2ry"]},
rz = {1000 , Name StrCat[pp3,"/3rz"]},
diff --git a/DiffractionGratings/grating3D_data_skewed_lattice.geo b/DiffractionGratings/grating3D_data_skewed_lattice.geo
index 2bf61c7..47cfae8 100644
--- a/DiffractionGratings/grating3D_data_skewed_lattice.geo
+++ b/DiffractionGratings/grating3D_data_skewed_lattice.geo
@@ -22,7 +22,7 @@ DefineConstant[
thick_L_6 = {50 , Name StrCat[pp2,"/8thickness layer 6 [nm] (substrate)"]},
xsideg = {30 , Name StrCat[pp2,"/9skew angle [deg]"],Visible 1},
- tag_geom = { 4 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="Torus",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
+ tag_geom = { 4 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="U",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
rx = {100 , Name StrCat[pp3,"/1rx"]},
ry = {100 , Name StrCat[pp3,"/2ry"]},
rz = {50 , Name StrCat[pp3,"/3rz"]},
diff --git a/DiffractionGratings/grating3D_data_torus.geo b/DiffractionGratings/grating3D_data_torus.geo
deleted file mode 100644
index bc27227..0000000
--- a/DiffractionGratings/grating3D_data_torus.geo
+++ /dev/null
@@ -1,125 +0,0 @@
-nm = 1000;
-pp1 = "1Incident Plane Wave";
-pp2 = "2Layers Thicknesses";
-pp3 = "3Scatterer Properties";
-pp4 = "4Layer Materials";
-pp5 = "5Computational Parameters";
-pp6 = "6Output";
-DefineConstant[
- FLAG_TOTAL = {0 , Name StrCat[pp1,"/0Formulation"],Choices {0="scattered field",1="total field"}},
- lambda0 = {1000 , Name StrCat[pp1,"/1lambda0 [nm]"]},
- thetadeg = {0 , Name StrCat[pp1,"/2theta0 [deg]"]},
- phideg = {0 , Name StrCat[pp1,"/3phi0 [deg]"]},
- psideg = {0 , Name StrCat[pp1,"/4psi0 [deg]"]},
- period_x = {300 , Name StrCat[pp2,"/1X period [nm]"]},
- period_y = {300 , Name StrCat[pp2,"/2Y period [nm]"]},
- thick_L_1 = {50 , Name StrCat[pp2,"/3thickness layer 1 [nm] (superstrate)"]},
- thick_L_2 = {100 , Name StrCat[pp2,"/4thickness layer 2 [nm]"]},
- thick_L_3 = {100 , Name StrCat[pp2,"/5thickness layer 3 [nm]"]},
- thick_L_4 = {100 , Name StrCat[pp2,"/6thickness layer 4 [nm]"]},
- thick_L_5 = {50 , Name StrCat[pp2,"/7thickness layer 5 [nm]"]},
- thick_L_6 = {50 , Name StrCat[pp2,"/8thickness layer 6 [nm] (substrate)"]},
- xsideg = {0 , Name StrCat[pp2,"/9skew angle [deg]"],Visible 1},
-
- tag_geom = { 3 , Name StrCat[pp3,"/0Shape"], Choices {1="Pyramid",2="Cylindrical Hole",3="Torus",4="HalfEllipspoid",5="Checkerboard",6="bi-sinusoidal",7="2D lamellar"}},
- rx = {150/2 , Name StrCat[pp3,"/1rx"]},
- ry = { 50 , Name StrCat[pp3,"/2ry"]},
- rz = { 25 , Name StrCat[pp3,"/3rz"]},
- flag_mat_scat = { 0 , Name StrCat[pp3,"/4Scatterer permittivity model"], Choices {0="Custom (Value Below)",1="SiO2",2="Ag (palik)",3="Al (palik)",4="Au (johnson)",5="Nb2O5",6="ZnSe",7="MgF2",8="TiO2",9="PMMA",10="Si",11="ITO",12="Cu (palik)"} },
- eps_re_Scat = {-21 , Name StrCat[pp3,"/5Custom real part of relative permittivity"]},
- eps_im_Scat = { 20 , Name StrCat[pp3,"/6Custom real part of relative permittivity"]},
-
- flag_mat_1 = { 0 , Name StrCat[pp4,"/1Layer 1"], Choices {0="Custom (Value Below)",1="SiO2",2="Ag (palik)",3="Al (palik)",4="Au (johnson)",5="Nb2O5",6="ZnSe",7="MgF2",8="TiO2",9="PMMA",10="Si",11="ITO",12="Cu (palik)"} },
- flag_mat_2 = { 0 , Name StrCat[pp4,"/2Layer 2"], Choices {0="Custom (Value Below)",1="SiO2",2="Ag (palik)",3="Al (palik)",4="Au (johnson)",5="Nb2O5",6="ZnSe",7="MgF2",8="TiO2",9="PMMA",10="Si",11="ITO",12="Cu (palik)"} },
- flag_mat_3 = { 0 , Name StrCat[pp4,"/3Layer 3"], Choices {0="Custom (Value Below)",1="SiO2",2="Ag (palik)",3="Al (palik)",4="Au (johnson)",5="Nb2O5",6="ZnSe",7="MgF2",8="TiO2",9="PMMA",10="Si",11="ITO",12="Cu (palik)"} },
- flag_mat_4 = { 0 , Name StrCat[pp4,"/4Layer 4"], Choices {0="Custom (Value Below)",1="SiO2",2="Ag (palik)",3="Al (palik)",4="Au (johnson)",5="Nb2O5",6="ZnSe",7="MgF2",8="TiO2",9="PMMA",10="Si",11="ITO",12="Cu (palik)"} },
- flag_mat_5 = { 0 , Name StrCat[pp4,"/5Layer 5"], Choices {0="Custom (Value Below)",1="SiO2",2="Ag (palik)",3="Al (palik)",4="Au (johnson)",5="Nb2O5",6="ZnSe",7="MgF2",8="TiO2",9="PMMA",10="Si",11="ITO",12="Cu (palik)"} },
- flag_mat_6 = { 0 , Name StrCat[pp4,"/6Layer 6"], Choices {0="Custom (Value Below)",1="SiO2",2="Ag (palik)",3="Al (palik)",4="Au (johnson)",5="Nb2O5",6="ZnSe",7="MgF2",8="TiO2",9="PMMA",10="Si",11="ITO",12="Cu (palik)"} },
- eps_re_L_1 = {1 , Name StrCat[pp4,"/7Custom Values/layer 1: real part of relative permittivity"]},
- eps_im_L_1 = {0 , Name StrCat[pp4,"/7Custom Values/layer 1: imag part of relative permittivity"]},
- eps_re_L_2 = {1 , Name StrCat[pp4,"/7Custom Values/layer 2: real part of relative permittivity"]},
- eps_im_L_2 = {0 , Name StrCat[pp4,"/7Custom Values/layer 2: imag part of relative permittivity"]},
- eps_re_L_3 = {1 , Name StrCat[pp4,"/7Custom Values/layer 3: real part of relative permittivity"]},
- eps_im_L_3 = {0 , Name StrCat[pp4,"/7Custom Values/layer 3: imag part of relative permittivity"]},
- eps_re_L_4 = {2.25 , Name StrCat[pp4,"/7Custom Values/layer 4: real part of relative permittivity"]},
- eps_im_L_4 = {0 , Name StrCat[pp4,"/7Custom Values/layer 4: imag part of relative permittivity"]},
- eps_re_L_5 = {2.25 , Name StrCat[pp4,"/7Custom Values/layer 5: real part of relative permittivity"]},
- eps_im_L_5 = {0 , Name StrCat[pp4,"/7Custom Values/layer 5: imag part of relative permittivity"]},
- eps_re_L_6 = {2.25 , Name StrCat[pp4,"/7Custom Values/layer 6: real part of relative permittivity"]},
- eps_im_L_6 = {0 , Name StrCat[pp4,"/7Custom Values/layer 6: imag part of relative permittivity"]},
-
- og = {0 , Name StrCat[pp5,"/0geometrical order [-]"] , Choices {0="1",1="2"} },
- oi = {1 , Name StrCat[pp5,"/0interpolation order [-]"], Choices {0="1",1="2"} },
- paramaille = {12 , Name StrCat[pp5,"/1Number of mesh elements per wavelength [-]"]},
- lc_scat = {10 , Name StrCat[pp5,"/2Scatterer absolute mesh size [nm]"]},
- PML_top = {lambda0*1.5 , Name StrCat[pp5,"/4PML top thickness [nm]"]},
- PML_bot = {lambda0*1.5 , Name StrCat[pp5,"/5PML bot thickness [nm]"]},
- Nmax = {1 , Name StrCat[pp5,"/6Max number of non specular order to output [-]"]},
- refine_mesh_L_1= {1 , Name StrCat[pp5,"/7refine layers/1refine mesh layer 1 [-]"]},
- refine_mesh_L_2= {1 , Name StrCat[pp5,"/7refine layers/2refine mesh layer 2 [-]"]},
- refine_mesh_L_3= {1 , Name StrCat[pp5,"/7refine layers/3refine mesh layer 3 [-]"]},
- refine_mesh_L_4= {1 , Name StrCat[pp5,"/7refine layers/4refine mesh layer 4 [-]"]},
- refine_mesh_L_5= {1 , Name StrCat[pp5,"/7refine layers/5refine mesh layer 5 [-]"]},
- refine_mesh_L_6= {1 , Name StrCat[pp5,"/7refine layers/6refine mesh layer 6 [-]"]},
- FlagLinkFacets = {1 , Name StrCat[pp5,"/8FlagLinkFacets? [-]"], Choices {0,1}, Visible 0},
- PML_TYPE = {0 , Name StrCat[pp5,"/9PML damping profile [-]"], Choices {0="constant profile",1="Bermudez profile"}, Visible 0},
-
- InterpSampling = {15 , Name StrCat[pp6,"/0Interpolation grid step [nm]"]},
- Flag_interp_cubic = { 1 , Name StrCat[pp6,"/1Interpolate on cubic grid?"], Choices {0,1} },
- FlagOutEtotCuts = { 1 , Name StrCat[pp6,"/2Output Total Electric Field cuts?"] , Choices {0,1} },
- FlagOutHtotCuts = { 0 , Name StrCat[pp6,"/3Output Total Magnetic Field cuts?"] , Choices {0,1} },
- FlagOutEscaCuts = { 1 , Name StrCat[pp6,"/4Output Scattered Electric Field cuts?"] , Choices {0,1} },
- FlagOutPoyCut = { 1 , Name StrCat[pp6,"/5Output Poynting cuts?"] , Choices {0,1} },
- FlagOutEtotFull = { 0 , Name StrCat[pp6,"/6Total Electric Field Full Output?"] , Choices {0,1} },
- FlagOutEscaFull = { 0 , Name StrCat[pp6,"/7Scattered Electric Field Full Output?"] , Choices {0,1} },
- FlagOutPoyFull = { 0 , Name StrCat[pp6,"/8Poynting Full Output?"] , Choices {0,1} }
-];
-
-lambda0 = nm * lambda0;
-period_x = nm * period_x;
-period_y = nm * period_y;
-thick_L_1 = nm * thick_L_1;
-thick_L_2 = nm * thick_L_2;
-thick_L_3 = nm * thick_L_3;
-thick_L_4 = nm * thick_L_4;
-thick_L_5 = nm * thick_L_5;
-thick_L_6 = nm * thick_L_6;
-rx = nm * rx;
-ry = nm * ry;
-rz = nm * rz;
-lc_scat = nm * lc_scat;
-PML_top = nm * PML_top;
-PML_bot = nm * PML_bot;
-InterpSampling= nm * InterpSampling;
-
-lambda_m = lambda0;
-og+=1;
-oi+=1;
-
-hh_L_6 = -thick_L_6;
-For k In {1:5}
- hh_L~{6-k} = hh_L~{7-k}+thick_L~{7-k};
-EndFor
-PML_bot_hh = hh_L_6-PML_bot;
-PML_top_hh = hh_L_1+thick_L_1;
-hh_L_7 = PML_bot_hh;
-hh_L_0 = PML_top_hh;
-thick_L_7 = PML_bot;
-thick_L_0 = PML_top;
-
-theta0 = thetadeg*Pi/180;
-phi0 = phideg*Pi/180;
-psi0 = psideg*Pi/180;
-xsi = xsideg*Pi/180;
-
-dyc = period_y*Cos[xsi];
-dys = period_y*Sin[xsi];
-
-DomainZsizeSca = PML_top_hh+PML_bot-(hh_L_6-PML_bot);
-DomainZsizeTot = PML_top_hh-hh_L_6;
-npts_interpX = period_x/InterpSampling;
-npts_interpY = period_y/InterpSampling;
-npts_checkpoyX = 50;
-npts_checkpoyY = 50;
-npts_interpZSca = DomainZsizeSca/InterpSampling;
-npts_interpZTot = DomainZsizeTot/InterpSampling;
diff --git a/DiffractionGratings/grating3D_parallel_Mmatrix.sh b/DiffractionGratings/grating3D_parallel_Mmatrix.sh
index 91287d8..9cbf398 100644
--- a/DiffractionGratings/grating3D_parallel_Mmatrix.sh
+++ b/DiffractionGratings/grating3D_parallel_Mmatrix.sh
@@ -8,7 +8,7 @@ export nb_phi=59
export lambda_min=350
export lambda_max=800
export FLAG_TOTAL=0
-export GRATING_CASE="half_ellipsoid"
+export GRATING_CASE="U"
export myDir="res_Matrix_nb_lam"$nb_lam"_nb_phi"$nb_phi"_total"$FLAG_TOTAL
rm -r $myDir
@@ -23,7 +23,7 @@ myfunc() {
local phi=$(echo "scale=10;360/($nb_phi)*$2" | bc )
local psi=$(echo "scale=10;90*$3" | bc )
cd $mysubDir
- getdp grating3D.pro -pre helmholtz_vector -msh grating3D.msh -cal -pos postop_helmholtz_vector -petsc_prealloc 200 -setstring test_case $GRATING_CASE -setnumber lambda0 $lam -setnumber thetadeg 50 -setnumber phideg $phi -setnumber psideg $psi -setnumber FLAG_TOTAL $FLAG_TOTAL
+ getdp grating3D.pro -pre helmholtz_vector -msh grating3D.msh -cal -pos postop_helmholtz_vector -petsc_prealloc 200 -setstring test_case $GRATING_CASE -setnumber lambda0 $lam -setnumber thetadeg 15 -setnumber phideg $phi -setnumber psideg $psi -setnumber FLAG_TOTAL $FLAG_TOTAL
if [ $3 -eq 0 ]; then cp res3D/rs.txt ../r_pin_sout_lam$1_phi$2.out ; fi
if [ $3 -eq 0 ]; then cp res3D/rp.txt ../r_pin_pout_lam$1_phi$2.out ; fi
if [ $3 -eq 1 ]; then cp res3D/rs.txt ../r_sin_sout_lam$1_phi$2.out ; fi
diff --git a/DiffractionGratings/grating3D_runall.sh b/DiffractionGratings/grating3D_runall.sh
index 9a90a02..b200ef0 100644
--- a/DiffractionGratings/grating3D_runall.sh
+++ b/DiffractionGratings/grating3D_runall.sh
@@ -1,6 +1,6 @@
rm -r res3D*
-# for t in bi_sinusoidal checker half_ellipsoid hole pyramid torus retrieve_2D_lamellar nanowire_solarcell convergence skewed_lattice
+# for t in bi_sinusoidal checker half_ellipsoid hole pyramid U retrieve_2D_lamellar nanowire_solarcell convergence skewed_lattice
for t in half_ellipsoid
do
for f in 0 1
@@ -10,7 +10,7 @@ do
done
done
-# for t in bi_sinusoidal checker half_ellipsoid hole pyramid torus retrieve_2D_lamellar nanowire_solarcell convergence skewed_lattice
+# for t in bi_sinusoidal checker half_ellipsoid hole pyramid U retrieve_2D_lamellar nanowire_solarcell convergence skewed_lattice
for t in half_ellipsoid
do
for f in 0 1
diff --git a/ElectromagneticScattering/scattererTmatrix.geo b/ElectromagneticScattering/scattererTmatrix.geo
index 65b5a77..3b5cbce 100644
--- a/ElectromagneticScattering/scattererTmatrix.geo
+++ b/ElectromagneticScattering/scattererTmatrix.geo
@@ -30,7 +30,7 @@ If (flag_shape==CONE)
Dilate { { 0,0,0 }, { 1 , cone_ry/cone_rx , 1} } { Volume{1}; }
EndIf
If (flag_shape==TOR)
- Torus (1) = {0,0,0,tor_r1,tor_r2x,tor_angle*Pi/180};
+ U (1) = {0,0,0,tor_r1,tor_r2x,tor_angle*Pi/180};
Dilate { { 0,0,0 }, { 1 , 1 , tor_r2z/tor_r2x} } { Volume{1}; }
EndIf
diff --git a/ElectromagneticScattering/scattererTmatrix_data.geo b/ElectromagneticScattering/scattererTmatrix_data.geo
index 8699e89..764c01a 100644
--- a/ElectromagneticScattering/scattererTmatrix_data.geo
+++ b/ElectromagneticScattering/scattererTmatrix_data.geo
@@ -34,7 +34,7 @@ RES_QNM = 3;
DefineConstant[
flag_shape = {ELL , Name StrCat[pp0, "0Scatterer shape"],
- Choices {ELL="ellispoid",PARALL="parallelepiped",CYL="cylinder",CONE="cone",TOR="split torus"},Closed 0}];
+ Choices {ELL="ellispoid",PARALL="parallelepiped",CYL="cylinder",CONE="cone",TOR="split U"},Closed 0}];
If (flag_shape==ELL)
DefineConstant[
@@ -88,10 +88,10 @@ If (flag_shape==CONE)
EndIf
If (flag_shape==TOR)
DefineConstant[
- tor_r1 = { 300 , Name StrCat[pp0 , "1torus radius 1 [nm]"], Highlight Str[colorppOK] , Closed 0},
- tor_r2x = { 100 , Name StrCat[pp0 , "2torus radius 2x [nm]"], Highlight Str[colorppOK] , Closed 0},
- tor_r2z = { 50 , Name StrCat[pp0 , "3torus radius 2z [nm]"], Highlight Str[colorppOK] , Closed 0},
- tor_angle = { 340 , Name StrCat[pp0 , "4torus angle [deg]"] , Highlight Str[colorppOK] , Closed 0, Min 5, Max 355}];
+ tor_r1 = { 300 , Name StrCat[pp0 , "1U radius 1 [nm]"], Highlight Str[colorppOK] , Closed 0},
+ tor_r2x = { 100 , Name StrCat[pp0 , "2U radius 2x [nm]"], Highlight Str[colorppOK] , Closed 0},
+ tor_r2z = { 50 , Name StrCat[pp0 , "3U radius 2z [nm]"], Highlight Str[colorppOK] , Closed 0},
+ tor_angle = { 340 , Name StrCat[pp0 , "4U angle [deg]"] , Highlight Str[colorppOK] , Closed 0, Min 5, Max 355}];
rbb = tor_r1+tor_r2x;
EndIf
DefineConstant[
diff --git a/ElectromagneticScattering/scattering_data.geo b/ElectromagneticScattering/scattering_data.geo
index 8cea03e..ab086e3 100644
--- a/ElectromagneticScattering/scattering_data.geo
+++ b/ElectromagneticScattering/scattering_data.geo
@@ -34,7 +34,7 @@ RES_QNM = 3;
DefineConstant[
flag_shape = {ELL , Name StrCat[pp0, "0Scatterer shape"],
- Choices {ELL="ellispoid",PARALL="parallelepiped",CYL="cylinder",CONE="cone",TOR="split torus"},Closed 0}];
+ Choices {ELL="ellispoid",PARALL="parallelepiped",CYL="cylinder",CONE="cone",TOR="split U"},Closed 0}];
If (flag_shape==ELL)
DefineConstant[
@@ -88,10 +88,10 @@ If (flag_shape==CONE)
EndIf
If (flag_shape==TOR)
DefineConstant[
- tor_r1 = { 300 , Name StrCat[pp0 , "1torus radius 1 [nm]"], Highlight Str[colorppOK] , Closed 0},
- tor_r2x = { 100 , Name StrCat[pp0 , "2torus radius 2x [nm]"], Highlight Str[colorppOK] , Closed 0},
- tor_r2z = { 50 , Name StrCat[pp0 , "3torus radius 2z [nm]"], Highlight Str[colorppOK] , Closed 0},
- tor_angle = { 340 , Name StrCat[pp0 , "4torus angle [deg]"] , Highlight Str[colorppOK] , Closed 0, Min 5, Max 355}];
+ tor_r1 = { 300 , Name StrCat[pp0 , "1U radius 1 [nm]"], Highlight Str[colorppOK] , Closed 0},
+ tor_r2x = { 100 , Name StrCat[pp0 , "2U radius 2x [nm]"], Highlight Str[colorppOK] , Closed 0},
+ tor_r2z = { 50 , Name StrCat[pp0 , "3U radius 2z [nm]"], Highlight Str[colorppOK] , Closed 0},
+ tor_angle = { 340 , Name StrCat[pp0 , "4U angle [deg]"] , Highlight Str[colorppOK] , Closed 0, Min 5, Max 355}];
rbb = tor_r1+tor_r2x;
EndIf
DefineConstant[
--
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